View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10711_high_6 (Length: 340)
Name: NF10711_high_6
Description: NF10711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10711_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 32 - 330
Target Start/End: Complemental strand, 5719539 - 5719244
Alignment:
| Q |
32 |
ataagcttaacctattacaataaaacaaaacagaactctcttcttaatcaactacattttaatgaaattttagggaagatgaagtctaaaatgaaatatc |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5719539 |
ataagcttaacctattacaataaaacaaaacagaactctctt---aatcaactacattttaatgaaattttagggaagatgaagtctaaaatgaaatatc |
5719443 |
T |
|
| Q |
132 |
tggctggcattgtcctctcagccttccctttcttcacacaacttgcaagattcatcgaggaacaaaagtcctccattacaatcttttcccatcaatgtag |
231 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5719442 |
tggctggtattgtcctctcagccttccctttcttcacacaacttgcaagattcatcgaggaacaaaagtcctccattacaatcttttcccatcaatgtag |
5719343 |
T |
|
| Q |
232 |
ttataataataccccaactgaacaaagatctcatcattttgacttgtttgttgacattcttttactaccaaataacttggtccattattcaacttcttc |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5719342 |
ttataataataccccaactgaacaaagatctcgtcattttgacttgtttgttgacattcttttactaccaaataacttggtccattattcaacttcttc |
5719244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University