View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10711_low_11 (Length: 309)
Name: NF10711_low_11
Description: NF10711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10711_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 128 - 297
Target Start/End: Complemental strand, 55127753 - 55127584
Alignment:
| Q |
128 |
ggtataaatctgcaatcccgtatttggacatcatgctactgttttgttcataactttcaatttatacatcctttttaagtaattctgattttgttggaaa |
227 |
Q |
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| T |
55127753 |
ggtataaatctgcaatcccgtattttgacatcatgctactgttttgttcataactttcaatttatacatcctttttaagtaattctgattttgttggaaa |
55127654 |
T |
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| Q |
228 |
gtagactcgtttcccttcattttacactcaattttcatgaaaattaactaaaggatggtagttgaaattg |
297 |
Q |
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| T |
55127653 |
gtagactcgtttcccttcattttacactcaattttcatggtaattaactaaaggatggtagttgaaattg |
55127584 |
T |
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Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 55127916 - 55127807
Alignment:
| Q |
11 |
cagagaaacttagaggtgggtttccctttccctcatccctcatgcattgattatgattttgattatgaaaattggaaattttagtttatgtatgtaggtc |
110 |
Q |
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| T |
55127916 |
cagagaaacttagaggtgggtttccctttccctcatccctcatgcattgattatgattttgattatgaaaattggaaattttagtttatgtatgtaggtc |
55127817 |
T |
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| Q |
111 |
atgatgcatg |
120 |
Q |
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| T |
55127816 |
ataatgcatg |
55127807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 12082579 - 12082623
Alignment:
| Q |
14 |
agaaacttagaggtgggtttccc-tttccctcatccctcatgcat |
57 |
Q |
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| T |
12082579 |
agaaacttagagatggatttcccctttccctcatccctcatgcat |
12082623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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