View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10711_low_13 (Length: 275)
Name: NF10711_low_13
Description: NF10711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10711_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 23694914 - 23694669
Alignment:
| Q |
16 |
gaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctgaacaatcat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23694914 |
gaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctgaacaatcat |
23694815 |
T |
|
| Q |
116 |
taaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttgctaaaattgaactacaatc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23694814 |
taaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttggtaaaattgaactacaatc |
23694715 |
T |
|
| Q |
216 |
atgaggctccaaaatatcattgcattttggatcaggacattttacc |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23694714 |
atgaggctccaaaatatcattgcattttggatcaggacattttacc |
23694669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 23700887 - 23701132
Alignment:
| Q |
16 |
gaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctgaacaatcat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23700887 |
gaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctgaacaatcat |
23700986 |
T |
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| Q |
116 |
taaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttgctaaaattgaactacaatc |
215 |
Q |
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| T |
23700987 |
taaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgaattttcccatctatcaaacacatcctttggtaaaattgaacaacaatc |
23701086 |
T |
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| Q |
216 |
atgaggctccaaaatatcattgcattttggatcaggacattttacc |
261 |
Q |
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| T |
23701087 |
atgaggctccaaaatatcattgcattttggatcaggacattttacc |
23701132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 23697045 - 23696794
Alignment:
| Q |
16 |
gaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctgaacaatcat |
115 |
Q |
| |
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|||||||||||||||||||| || ||||||| |||||| ||||| || ||| | || |||| | ||| ||||||||||| |||||||||||||||||||| |
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| T |
23697045 |
gaaaccttacattgtgcacaaaataatctattacaatgaggacactcagaaacggttacaacttcctcttcatcattcaccaacatagctgaacaatcat |
23696946 |
T |
|
| Q |
116 |
taaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttgctaaaattgaactacaatc |
215 |
Q |
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|||||||||| || ||||| |||||| ||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| || || | ||||||| |
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| T |
23696945 |
taaaaggacagtacaatttttgtgaatctaacaccatattctcacaaagtgcctttccccatctctcaaacacatcctttggtataagggtgctacaatt |
23696846 |
T |
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| Q |
216 |
atgaggctccaaaatatcattgcattttggatcaggacattttacctttgct |
267 |
Q |
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|||||||||||| ||| ||||||| ||||||| ||||||||||||| ||||| |
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| T |
23696845 |
atgaggctccaatataccattgcaatttggataaggacattttaccattgct |
23696794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 259
Target Start/End: Original strand, 8149038 - 8149270
Alignment:
| Q |
24 |
acattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctgaacaatcattaaaagga |
123 |
Q |
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||||||||| ||||| | ||||||||||||||||||||||| | |||||| | | ||| ||||||||| |||||||||||||||||| ||||||||| |
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| T |
8149038 |
acattgtgcgcagaatagtctatgacaatgtggacattccgtaattctcacaacttcatttccatcattcaccaacatagctgaacaatccttaaaagga |
8149137 |
T |
|
| Q |
124 |
caataaaatttctgtgaacctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttgctaaaattgaactacaatcatgaggct |
223 |
Q |
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||||||| ||||| ||| || |||| | | ||| ||||||| | ||||||| || ||||||||||||| || ||||||| |||| | |||| | |
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| T |
8149138 |
caataaattttctttgatccgaacatcgaa---tcaactagtgcatctccccatctttcgaacacatcctttggtataattgaaatacattgttgagtgt |
8149234 |
T |
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| Q |
224 |
ccaaaatatcattgcattttggatcaggacatttta |
259 |
Q |
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| ||| || |||||| ||||||||||||||||||| |
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| T |
8149235 |
caaaattactattgcaatttggatcaggacatttta |
8149270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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