View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10711_low_14 (Length: 270)
Name: NF10711_low_14
Description: NF10711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10711_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 81 - 252
Target Start/End: Original strand, 15020637 - 15020807
Alignment:
| Q |
81 |
actgaaaattgaccttaaaattttgatcattaacattgttattattagtaccaaacaaagaactgttccaacaaatctggatgtatggaaaattccaatt |
180 |
Q |
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| T |
15020637 |
actgaaaattgaccttaaaattatgatcattaacattgttattattagtaccaaacaaagaactgttccaacaaatctggatgtatggaaaattccaatt |
15020736 |
T |
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| Q |
181 |
atgctgagcttctgacatgtgtactcattcacgagagattcaagtgttactcttctttgtggtggatacaag |
252 |
Q |
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| T |
15020737 |
atgctgagcttctgacatgtgtactcattcacgagagattcaagtgttacatttc-ttgtggtggatacaag |
15020807 |
T |
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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 15020555 - 15020605
Alignment:
| Q |
1 |
cctcagggagggtacatctgaatttttgttggaacataacatgccaactcac |
52 |
Q |
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| T |
15020555 |
cctcagggagggtacatctgaatttt-gttggaacataacatgccaactcac |
15020605 |
T |
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