View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10711_low_16 (Length: 265)
Name: NF10711_low_16
Description: NF10711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10711_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 33 - 250
Target Start/End: Complemental strand, 52905499 - 52905282
Alignment:
| Q |
33 |
gagatgaactaccactaaatgcaactgcaaaactaaaaggaacacaagagtattactttgattagtaattattaactcgctagttaacaaatcatttgat |
132 |
Q |
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| T |
52905499 |
gagatgaactgccactaaatgcaactgcaaaactaaaaggaacacaagggtattactttgattagtaattattaaaacgctagttaacaaatcatttgat |
52905400 |
T |
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| Q |
133 |
atcagctatgtcctaatcacaaaactacaatactaaacatgtgctagcggttttagtaagatgtttagttaaccataatactagtaaacatgtgtgagcg |
232 |
Q |
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| T |
52905399 |
atcagctatgtcctaatcacgaaactacaatactaaacatgtgttagcggttttagtaagatgtttagttaaccataatactactaaacatgtgttagcg |
52905300 |
T |
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| Q |
233 |
gttttagcaagatgttta |
250 |
Q |
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| T |
52905299 |
gttttagcaagatgttta |
52905282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 52905318 - 52905269
Alignment:
| Q |
163 |
tactaaacatgtgctagcggttttagtaagatgtttagttaaccataata |
212 |
Q |
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| T |
52905318 |
tactaaacatgtgttagcggttttagcaagatgtttagttaaccataata |
52905269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 43720459 - 43720271
Alignment:
| Q |
34 |
agatgaactaccactaaatgcaactgcaaaactaaaaggaacacaagagtattactttgattagtaattat----taactcgctagttaacaaatcattt |
129 |
Q |
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| T |
43720459 |
agatgaactaccactaaatgcaactgcaaaactaaaatgaacacaagggcattactttgattagtaattatatattaacaagcaaattaacaaatcattt |
43720360 |
T |
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| Q |
130 |
gatatcagctatgtcctaatcacaaaactacaatactaaacatgtg------ctagcggttttagtaagatgtttagttaaccataata |
212 |
Q |
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|| ||||||||||||||| |||| |||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
43720359 |
gacatcagctatgtcctactcacgaaactacaataccaaacatgtgttagacttagaggttttagtaagatgtttagttaaccataata |
43720271 |
T |
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