View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10711_low_18 (Length: 252)
Name: NF10711_low_18
Description: NF10711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10711_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 31009243 - 31009342
Alignment:
| Q |
1 |
ctctagatggtcaaattccttcactattactcaacaataaaatagtataattttgtcctttctattcatttcatacactttttacatagacacttatatt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
31009243 |
ctctagatggt-aaattccttcactattactcaacaataaaatagtataattttgtcctttctattcatttcatacac--tttacatagacacttatact |
31009339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 31009429 - 31009485
Alignment:
| Q |
184 |
atagtagccgtaccatacccaggtcgaggccacatcaatccaatgatgaacctatgc |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31009429 |
atagtagccgtaccatacccaggtcgaggccacatcaacccaatgatgaacctatgc |
31009485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University