View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10711_low_2 (Length: 418)
Name: NF10711_low_2
Description: NF10711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10711_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 337556 - 337169
Alignment:
| Q |
19 |
tgtcaaccccgagattttacatttccaatgcactgaaactgaaagcatctgcatgaattttgaatacattacaaagacagcacaagatcaagatctgctc |
118 |
Q |
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| T |
337556 |
tgtcaaccccgagattttacatttccaatgcactgaaactgaaagcatctgcatgaattttgaatacattacaaagacagcacaagatcaagatctgctc |
337457 |
T |
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| Q |
119 |
tacattcacaacctagctaggcatttgcatctatttgtagctgctcttaatgtggaaaacttgtatgcatttaatnnnnnnnnnncaaggattgaacatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
337456 |
tacattcacaacctagctaggcatttgcatctatctgtagctgctcttaatgtggaaaacttgtatgcatttaat-aaaaaaaaacaaggattgaacatg |
337358 |
T |
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| Q |
219 |
tttatacagaacctgcctaacttactatcctgtcctgtgttcactattcaattcatccacaacaggattaattaaactatgaaagaaacaacnnnnnnnn |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
337357 |
tttatacagaacctgcctaacttactatcctgtcctgtgttcattattcaattcatccacaacaggattaattaaactatgaaagaaacaaaacaaaaaa |
337258 |
T |
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| Q |
319 |
nnttatttctaaattttccttttgagaagacaaaagcacnnnnnnnngggagcataataatcccttttgagatcaaaaatgtcttctct |
407 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
337257 |
aattatttctaaattttccttttgagaagacaaaaacacaaaaaaaagggagcataataatcccttttgagatcaaaaatgtcttctct |
337169 |
T |
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