View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10711_low_22 (Length: 238)
Name: NF10711_low_22
Description: NF10711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10711_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 48956335 - 48956538
Alignment:
| Q |
12 |
gagatgaaggaagaagcagcctttacagttttttgtccattccactgactcaaataaatagtgaaacataacacaccaaatcactttcttaaacataatt |
111 |
Q |
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| T |
48956335 |
gagatgaaggaagaagcagcctttacagttttttgtccattccactgactcaaataaatagtgaaacataacacaccaaatcactttcttaaacataatt |
48956434 |
T |
|
| Q |
112 |
catcactaattgatgtacattatttatttattatgcttatatataatcaccacgtcgctctcattctctctttttgaataagtcaagtcaactatgaata |
211 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48956435 |
catcactaattgatgtgca----ttatttattatgcttatatataatcaccacgtcgctctcattctctctttttgaataagtcaagtcaactatgaata |
48956530 |
T |
|
| Q |
212 |
cagttaat |
219 |
Q |
| |
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|||||||| |
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| T |
48956531 |
cagttaat |
48956538 |
T |
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