View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10711_low_23 (Length: 235)
Name: NF10711_low_23
Description: NF10711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10711_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 23697497 - 23697275
Alignment:
| Q |
1 |
caacagggctgcaaagggtgatactttaccactgttgtgtgaccaaaaacatgagaccaatgctattaatctaaggtacacacaccaacatcagttggtt |
100 |
Q |
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| T |
23697497 |
caacagggctgcaaagggtgatactttaccactgttgcgtgaccaaaaacatgagaccaatgctattaatctaaggtacatacaccaacattagttggtt |
23697398 |
T |
|
| Q |
101 |
aaatgctcctatatatataaatcagatatatggattcatgtttgttcatttattccattttctgacacaggtttaagttagaggtggaagttgaatataa |
200 |
Q |
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| T |
23697397 |
aaatgctcc----catataaatcagatatatggattcatgtttgttcatttattccattttctgacacaggtttaagttagaggtggaagttgaatataa |
23697302 |
T |
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| Q |
201 |
tggagttgaaac--agttctttctctg |
225 |
Q |
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|||||||||||| ||||||||||||| |
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| T |
23697301 |
tggagttgaaacaaagttctttctctg |
23697275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 22078493 - 22078417
Alignment:
| Q |
1 |
caacagggctgcaaagggtgatactttaccactgttgtgtgaccaaaaacatgagaccaatgctattaatctaaggt |
77 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
22078493 |
caacagagttgcaaagggtgatactttaccactgttgtgtgaccaaaaacacgagaccaatgctatcaatctaaggt |
22078417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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