View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10711_low_3 (Length: 392)
Name: NF10711_low_3
Description: NF10711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10711_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 12172914 - 12173114
Alignment:
| Q |
18 |
cttatcatataaatacatgtatagtattattctcctctatattgctcattaccatggctattatgatttgtgatgataaattttcatgtaacgatgctga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12172914 |
cttatcatataaatacatgtatagtattattctcctctatattgctcattaccatggccattatgatttgtgatgataaattttcatgtaacgatgctga |
12173013 |
T |
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| Q |
118 |
tgttgttaaaaatagaatatcatttttaatttatccaaagtttatgacttatggattcatttagtttgtagtagaaatattgtatttgcagttgatattc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12173014 |
tgttgttaaaaatagaatatcatttttaatttatccaaagtttatgacttatggattcatttagtttgtattagaaatattgtatttgcagttgatattc |
12173113 |
T |
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| Q |
218 |
a |
218 |
Q |
| |
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| |
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| T |
12173114 |
a |
12173114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 12417342 - 12417542
Alignment:
| Q |
18 |
cttatcatataaatacatgtatagtattattctcctctatattgctcattaccatggctattatgatttgtgatgataaattttcatgtaacgatgctga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12417342 |
cttatcatataaatacatgtatagtattattctcctctatattgctcattaccatggccattatgatttgtgatgataaattttcatgtaacgatgctga |
12417441 |
T |
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| Q |
118 |
tgttgttaaaaatagaatatcatttttaatttatccaaagtttatgacttatggattcatttagtttgtagtagaaatattgtatttgcagttgatattc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12417442 |
tgttgttaaaaatagaatatcatttttaatttatccaaagtttatgacttatggattcatttagtttgtattagaaatattgtatttgcagttgatattc |
12417541 |
T |
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| Q |
218 |
a |
218 |
Q |
| |
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| |
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| T |
12417542 |
a |
12417542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 341 - 384
Target Start/End: Original strand, 12173120 - 12173163
Alignment:
| Q |
341 |
tttagtgaggaacaaagatttatgcttttgtctaatcctttgct |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12173120 |
tttagtgaggaacaaagatttatgcttttgtctaatcctttgct |
12173163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 341 - 384
Target Start/End: Original strand, 12417548 - 12417591
Alignment:
| Q |
341 |
tttagtgaggaacaaagatttatgcttttgtctaatcctttgct |
384 |
Q |
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| T |
12417548 |
tttagtgaggaacaaagatttatgcttttgtctaatcctttgct |
12417591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 39717393 - 39717430
Alignment:
| Q |
278 |
aaataaaaagggtactttgatatttttgatagtatgta |
315 |
Q |
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| T |
39717393 |
aaataaaaagggtattttggtatttttgatagtatgta |
39717430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 50691060 - 50691096
Alignment:
| Q |
279 |
aataaaaagggtactttgatatttttgatagtatgta |
315 |
Q |
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||||||||||||| |||||||||||||||||| |||| |
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| T |
50691060 |
aataaaaagggtattttgatatttttgatagtctgta |
50691096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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