View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10711_low_4 (Length: 363)
Name: NF10711_low_4
Description: NF10711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10711_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 7222390 - 7222115
Alignment:
| Q |
1 |
aggaccatcgctcggatgaacgaagaagggaggggtttgatgcagagaagggtcaaccgtaggaacatgagccaatctaggtggcattgcgatgaacgaa |
100 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7222390 |
aggaccatcgctcggatgaacgaagaagggtgtggtttgatgcagagaagggtcaaccgtaggaacatgagccaatctaggtggcattgcgatgaacgaa |
7222291 |
T |
|
| Q |
101 |
ggcaaactgcgga---tcgctacacaacgaatgataccatgttaagatgaaaaaccacatatgagaataagaagaaggagaagattgaataaggaaaagt |
197 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7222290 |
ggcaaactgcggaggatcgctacacaacgaatgataccatgttaagatgaaaaagcacatatgagaataagaagaaggagaagattgaataaggaaaagt |
7222191 |
T |
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| Q |
198 |
gtgattctcatagattgaattgtgagcttacaactaattatacaggaaaagtaagtgtgcacaagcgcatcacaca |
273 |
Q |
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| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7222190 |
gggattctcatagattgaattgtgagcttacaactaattatataggaaaagtaagtgtgcacaagcgcatcacaca |
7222115 |
T |
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