View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10711_low_9 (Length: 340)
Name: NF10711_low_9
Description: NF10711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10711_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 32 - 330
Target Start/End: Complemental strand, 5719539 - 5719244
Alignment:
| Q |
32 |
ataagcttaacctattacaataaaacaaaacagaactctcttcttaatcaactacattttaatgaaattttagggaagatgaagtctaaaatgaaatatc |
131 |
Q |
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| T |
5719539 |
ataagcttaacctattacaataaaacaaaacagaactctctt---aatcaactacattttaatgaaattttagggaagatgaagtctaaaatgaaatatc |
5719443 |
T |
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| Q |
132 |
tggctggcattgtcctctcagccttccctttcttcacacaacttgcaagattcatcgaggaacaaaagtcctccattacaatcttttcccatcaatgtag |
231 |
Q |
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| T |
5719442 |
tggctggtattgtcctctcagccttccctttcttcacacaacttgcaagattcatcgaggaacaaaagtcctccattacaatcttttcccatcaatgtag |
5719343 |
T |
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| Q |
232 |
ttataataataccccaactgaacaaagatctcatcattttgacttgtttgttgacattcttttactaccaaataacttggtccattattcaacttcttc |
330 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5719342 |
ttataataataccccaactgaacaaagatctcgtcattttgacttgtttgttgacattcttttactaccaaataacttggtccattattcaacttcttc |
5719244 |
T |
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