View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10712_high_1 (Length: 238)
Name: NF10712_high_1
Description: NF10712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10712_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 9334584 - 9334733
Alignment:
| Q |
72 |
tatatatctaatagtgagaattacataccaagtaataagtagtatatgatttatgcacaatgaagaaaacttcaaaatagatgtaataaaggatgaacta |
171 |
Q |
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| T |
9334584 |
tatatatctaatagtgagaattacacaccaagtaatacgta---tatgatttatgcacaatgaagaaaacttcaaaatagatgtaataaaggatgaacta |
9334680 |
T |
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| Q |
172 |
tcaaaacctaatcaaagtaaacgacaaacaaagaggacagataagtcatagat |
224 |
Q |
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| T |
9334681 |
tcaaaacctaatcaaagtaaacgacaaacaaagaggacagataagtcatagat |
9334733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 9329172 - 9329241
Alignment:
| Q |
81 |
aatagtgagaattacataccaagtaataagtagtatatgatttatgcacaatgaagaaaacttcaaaatagat |
153 |
Q |
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| T |
9329172 |
aatagtgagaattacacaccaaataataagta---tatgatttatgcacaatgaagaaaacttcaaaatagat |
9329241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 451344 - 451271
Alignment:
| Q |
1 |
atgagaagatccaaatcttaataaatcataacagagaaaatttataaaagtaaaatgataaattcattttctat |
74 |
Q |
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| T |
451344 |
atgagaagattcaaatcctaataaataatgtcatggaaaatttataaaagtaaattgataaattgattttctat |
451271 |
T |
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