View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10713_high_1 (Length: 313)
Name: NF10713_high_1
Description: NF10713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10713_high_1 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 6006926 - 6007238
Alignment:
| Q |
1 |
gcaaccttgaagcacaagcttccttaaaggaaatcctttctctgcaatagatgaaagcaatcgatccgagatatatgaatacgacaaatcaatacaagtt |
100 |
Q |
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| T |
6006926 |
gcaaccttgaagcacaagcttccttaaaggaaaacctttctctgcaatagatgaaagcaatcgatccgagatatatgaatacgacaaatcaagacaagtt |
6007025 |
T |
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| Q |
101 |
aagcccttcaatctcaccaacgagtcaataaaaatattgtgattaccaataccaaataacctcaatttactaaaagaaagagacttcaaacccggcctct |
200 |
Q |
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| T |
6007026 |
aagcctttcaatttcaccaacgagtcaataaaaatattgtgattaccaataccaaatagcctcaatttactaaaagaaagagacttcaaacccggcctct |
6007125 |
T |
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| Q |
201 |
cgcaaatagcagaagcaaccccataatgagttatgaacgagcatttcaacatcacaatctcttctagaaactcacacctcttacacatgttcaaaagcat |
300 |
Q |
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| T |
6007126 |
cgcaaatagcagaagcaaccccataatgagttatgaacgagcatttcaacatcacaatctcttctagaaactcacacctcttacacatgttcaaaagcat |
6007225 |
T |
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| Q |
301 |
tgagtctttcata |
313 |
Q |
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||||||||||||| |
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| T |
6007226 |
tgagtctttcata |
6007238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 149
Target Start/End: Complemental strand, 1527673 - 1527559
Alignment:
| Q |
35 |
cctttctctgcaatagatgaaagcaatcgatccgagatatatgaatacgacaaatcaatacaagttaagcccttcaatctcaccaacgagtcaataaaaa |
134 |
Q |
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| T |
1527673 |
cctttctctgcaacagatgaaagcaattcatctgggataaacgaatatgataaatcaagacaagttaagcccatcaaattcaccaacgactgaataaaaa |
1527574 |
T |
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| Q |
135 |
tattgtgattaccaa |
149 |
Q |
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| ||| |||| |||| |
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| T |
1527573 |
tgttgagatttccaa |
1527559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 3438112 - 3438026
Alignment:
| Q |
43 |
tgcaatagatgaaagcaatcgatccgagatatatgaatacgacaaatcaatacaagttaagcccttcaatctcaccaacgagtcaat |
129 |
Q |
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| T |
3438112 |
tgcaatagaggaaagtaattcatccgggatacatgaagacgacaaatcaagacaagttaatcccttcagactcaccaacaagtcaat |
3438026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 12118776 - 12118663
Alignment:
| Q |
36 |
ctttctctgcaatagatgaaagcaatcgatccgagatatatgaatacgacaaatcaatacaagttaagcccttcaatctcaccaacgagtcaataaaaat |
135 |
Q |
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| T |
12118776 |
ctttctctgcaacatatgaaagcaattcatctgggataaacgaatatgataaatcaagagaagttaagcccgtcaaattcaccaacgactcaataaagat |
12118677 |
T |
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| Q |
136 |
attgtgattaccaa |
149 |
Q |
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||| |||| |||| |
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| T |
12118676 |
gttgagatttccaa |
12118663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 547596 - 547641
Alignment:
| Q |
86 |
aaatcaatacaagttaagcccttcaatctcaccaacgagtcaataa |
131 |
Q |
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| T |
547596 |
aaatcaagacaagttaagcccttcaaacacatcaacgagtcaataa |
547641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 55908152 - 55908104
Alignment:
| Q |
81 |
acgacaaatcaatacaagttaagcccttcaatctcaccaacgagtcaat |
129 |
Q |
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| T |
55908152 |
acgacaaattaagacaagttaagccattcaaactcaccaacgagccaat |
55908104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 297
Target Start/End: Original strand, 44244811 - 44244869
Alignment:
| Q |
239 |
gagcatttcaacatcacaatctcttctagaaactcacacctcttacacatgttcaaaag |
297 |
Q |
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| T |
44244811 |
gagcatttcaacatcctaacctcttcaagaaactcacaattcttacacatgttcaaaag |
44244869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 10615269 - 10615317
Alignment:
| Q |
85 |
caaatcaatacaagttaagcccttcaatctcaccaacgagtcaataaaa |
133 |
Q |
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|||||||| |||||| ||||||||||| |||||||| |||||||||||| |
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| T |
10615269 |
caaatcaagacaagtcaagcccttcaaactcaccaatgagtcaataaaa |
10615317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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