View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10713_low_2 (Length: 297)
Name: NF10713_low_2
Description: NF10713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10713_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 6007515 - 6007249
Alignment:
| Q |
18 |
taaacaacatcaaatcaatcaatctgtcaaaccaatctactattccttcaaatgggttgcgagctttgtctgaaaagtgtacatctttgacctctctcac |
117 |
Q |
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| T |
6007515 |
taaaccacatcaaatcaatcaatctgtcaaaccaatctactattccttcaaatgggttgcgagctttgtcagaaaaatgtacatctttgacctctctcac |
6007416 |
T |
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| Q |
118 |
gtgttccaacattgattatataagtatccctgacatagttcttatctctgattgttttcctttactcgaagaacttgatcttagttaccctgaaaatgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6007415 |
gtgttccaacattgattatataagtatccctgacatagttcttatctctgattgttttcctttactcgaagaacttgatcttagttaccctgaaaatgtt |
6007316 |
T |
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| Q |
218 |
gatcttatagtaaatcctttgttttttgaacttcctgaacaaaagcttcgcaaggttaatctctctg |
284 |
Q |
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| T |
6007315 |
gatcttatagtaaatcctttgttttttgaacttcctgaacagaagcttcgcaaggttaatctttctg |
6007249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 94
Target Start/End: Complemental strand, 2547356 - 2547321
Alignment:
| Q |
59 |
attccttcaaatgggttgcgagctttgtctgaaaag |
94 |
Q |
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| T |
2547356 |
attcctgcaaatgggttgcgagctttgtctgaaaag |
2547321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 8186388 - 8186499
Alignment:
| Q |
97 |
tacatctttgacctctctcacgtgttccaacattgattatataagtatccctgacatagttcttatctctgattgttttcctttactcgaagaacttgat |
196 |
Q |
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| T |
8186388 |
tacaactttgacctcactcacatgttccaacattgaatctatcaatagcactgacatcttcctcatcgccgattgttttcctttcctagaagaactcgat |
8186487 |
T |
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| Q |
197 |
cttagttaccct |
208 |
Q |
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| T |
8186488 |
ctcagtaaccct |
8186499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 1755606 - 1755548
Alignment:
| Q |
71 |
gggttgcgagctttgtctgaaaagtgtacatctttgacctctctcacgtgttccaacat |
129 |
Q |
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| T |
1755606 |
gggttgcaagctttctctcaaaagattacaactttgacctctctcacatgttccaacat |
1755548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 1036640 - 1036738
Alignment:
| Q |
97 |
tacatctttgacctctctcacgtgttccaacattgattatataagtatccctgacatagttcttatctctgattgttttcctttactcgaagaacttga |
195 |
Q |
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| T |
1036640 |
tacaactttgacttctctcatttgttccaacattgcttctatatgtaacaatgatcttgttcttatttctgattgctttcctttccttgaagaacttga |
1036738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 51763382 - 51763455
Alignment:
| Q |
60 |
ttccttcaaatgggttgcgagctttgtctgaaaagtgtacatctttgacctctctcacgtgttccaacattgat |
133 |
Q |
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| T |
51763382 |
ttcctacaaatgggttgcgagttttttcacaaaagattacaactttgacatctctcacttgttcccacattgat |
51763455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 13469604 - 13469712
Alignment:
| Q |
23 |
aacatcaaatcaatcaatctgtcaaaccaatctactattccttcaaatgggttgcgagctttgtctgaaaagtgtacatctttgacctctctcacgtgtt |
122 |
Q |
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| T |
13469604 |
aacatcacatcacttaatctctccaaccaacccactgttcctgcaaatgggttacgagctttctcccaaaagaatacaacgctgacctctctcacttgtt |
13469703 |
T |
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| Q |
123 |
ccaacattg |
131 |
Q |
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| T |
13469704 |
cccacattg |
13469712 |
T |
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