View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10714_high_3 (Length: 263)
Name: NF10714_high_3
Description: NF10714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10714_high_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 3 - 263
Target Start/End: Complemental strand, 3297480 - 3297218
Alignment:
| Q |
3 |
tattgatcagagtttacctatgttacatacgaagccatcaatcactgtctaattcacatataaaccaaactaggctagttaaagcaccttccattaggtg |
102 |
Q |
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| T |
3297480 |
tattgatcagagtttacctatgttacatacgaagccatcaatcactgtctaattcacatagaaaccaaactaggctagttaaagcaccttccattaggtg |
3297381 |
T |
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| Q |
103 |
aatctctctacttttactattacaaaactagatatnnnnnnntggatcaaaataacaagaaaaggacttggcagcagt--aaaaaactatagtatatatt |
200 |
Q |
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| T |
3297380 |
aatctctctacttttactattacaaaactagatataaaaaaatggatcaaaataacaagaaaaggacttggcagcagtaaaaaaaactatagtatatact |
3297281 |
T |
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| Q |
201 |
atgacgtacggatacatttacgaattcttacatattgatatcattaataatttgaaaaatcac |
263 |
Q |
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| T |
3297280 |
atgaagcatggatacatttacgaactcttacatattgatatcattaataatttaaaaaatcac |
3297218 |
T |
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