View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10714_high_4 (Length: 241)
Name: NF10714_high_4
Description: NF10714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10714_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1330376 - 1330154
Alignment:
| Q |
1 |
caactaataaaaaattattctagtcaacggtggtaattgccatagttctgttgatagcctcccatataggagttattactaccaggttgttgcttaagtg |
100 |
Q |
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| T |
1330376 |
caactaataaaaaattattctagtcaacggtggtaattgccatagttctgttgatagcctcccatataggagttattactaccaggttgttgcttaagtg |
1330277 |
T |
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| Q |
101 |
cagcatgtccttgtacgcgatccctttcatattgctgccaaatcagctgttcttcaactagtaacctttgcttcttctccatctctgacatttgaacgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1330276 |
cagcatgtccttgtacgcgatccctttcatattgctgccaaatcagctgttcttcaactagtaacctttgcttcttctccatctctgacatttgaacgta |
1330177 |
T |
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| Q |
201 |
agacggtggtgcgatagccaatg |
223 |
Q |
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|||||| |||||||||||||||| |
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| T |
1330176 |
agacggcggtgcgatagccaatg |
1330154 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 1925801 - 1925717
Alignment:
| Q |
128 |
catattgctgccaaatcagctgttcttcaactagtaacctttgcttcttctccatctctgacatttgaacgtaagacggtggtgc |
212 |
Q |
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|||||||||||||||| ||||||||| ||| || |||||| || |||||||||||||||||||||| |||| |||||||| |
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| T |
1925801 |
catattgctgccaaattgcttgttcttcagctaatagcctttgtctcgtctccatctctgacatttgaacataagctggtggtgc |
1925717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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