View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10715_high_3 (Length: 241)
Name: NF10715_high_3
Description: NF10715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10715_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 6175042 - 6175155
Alignment:
| Q |
10 |
aatactcttttaacattttcctaatataatttaatgtatcatttaaacaattatttaaattatgacaagaaattacaatatgtaaggaagaaataatagg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6175042 |
aatactcttttaacattttcctaatataatttaatgtatcatttaaacaattatttaaattatgacaagaaattacaatatgtaaggaagaaataatagg |
6175141 |
T |
|
| Q |
110 |
atcttaaaacaaat |
123 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6175142 |
atcttaaaacaaat |
6175155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 6175328 - 6175427
Alignment:
| Q |
126 |
aacttgtaaggtatcaacaacaaaggaattaagttaaagaattttgtttgcatggaacttgaaaggctctatttatccgcagcttatttatggatacata |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6175328 |
aacttgtaaggtatcaacaacaaaggaattaagttaaagaattttgtttgcagggaacttgaaaggctctatttacccgcagcttatttatggatacata |
6175427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University