View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10715_low_1 (Length: 491)
Name: NF10715_low_1
Description: NF10715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10715_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 143 - 474
Target Start/End: Original strand, 2443331 - 2443662
Alignment:
| Q |
143 |
ccaggacagctcacatccgaaccccaaagacaagacagcaaccaaccttaaaaagaagttgacgcatgtattttcaatctactcaaactctaatgcaaag |
242 |
Q |
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| T |
2443331 |
ccaggacagctcacatccgaaccccaaagacaagacagcaaccaaccttaaaaagcagttgacgcatgtattttcaatctactcaaactctaatgcaaag |
2443430 |
T |
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| Q |
243 |
ataacacttttattccatcaattacttcattgatctccctcacttggttgcatcaaatcctttcgttcctcaccctgcaaatcaccaaaagcttggaatg |
342 |
Q |
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||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2443431 |
ataacacttttatcccatcaattacttcatcaatctccctcacttggttgcatcaaatcctttcgttcctcaccctgcaaatcaccaaaagcttggaatg |
2443530 |
T |
|
| Q |
343 |
ccaaatcaaccatgcacctttcaaattttcttttcattaacctcaaccgaccaacaagaaaagtgcacaaataaattcagggagtaacaaaactaaaatc |
442 |
Q |
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|||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
2443531 |
ccaaatcaaccacgcacctttcagattttcttctcattaacctcaaccgaccaacaagaaaagtgcacaaataaattcggggagtaacaaaattaaaatc |
2443630 |
T |
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| Q |
443 |
catccatctcaaaacgttttgacacaccatat |
474 |
Q |
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|||||||||||||||||||||| ||||||||| |
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| T |
2443631 |
catccatctcaaaacgttttgaaacaccatat |
2443662 |
T |
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