View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10715_low_2 (Length: 409)
Name: NF10715_low_2
Description: NF10715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10715_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 41 - 398
Target Start/End: Complemental strand, 26684730 - 26684375
Alignment:
| Q |
41 |
ttctcactccatatattatgagcaggaactaaggaaaacttcgctaaatggtcaccaaattcattagctaatcttttcacatgaacaacttgacaaatag |
140 |
Q |
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| T |
26684730 |
ttctcactccatatattatgagcaggaactaaggaaaacttcgctaaatggtcaccaaattcattagctaatcttttcacatgaacaacttgacaaatag |
26684631 |
T |
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| Q |
141 |
gaaataaatggctaattatacaacaatcttaaggaactggacagtaatatgagttgtcacattcacatttacaaaccaaattaacctgtttaagcaaagt |
240 |
Q |
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| T |
26684630 |
gaaataaatggctaattatacaacaatcttaaggaactggacagtaatatgagttgtcacattcacatttacaaaccaaattaacttgtttaagcaaagt |
26684531 |
T |
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| Q |
241 |
atgtcttccttgaggaaactctatgttctcgtaatatctaattgaatgataaacacttgttaaaatacattgtgtaatttgttgatgatgttaaaatatt |
340 |
Q |
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| T |
26684530 |
atgtcttccttgaggaaactctatgttctcgcaatatctaattgaatgataaacacttgttaaaatacattgtgtaatttgttgatgatgttaaaatatt |
26684431 |
T |
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| Q |
341 |
taattgtagccgtcaattaaaatgaaagacatatatgagaaaaaacattgaccccttt |
398 |
Q |
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| T |
26684430 |
taattgtagccgtcaattaaaatgaaagac--atatgagaaaaaacattgaccccttt |
26684375 |
T |
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