View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10715_low_3 (Length: 288)
Name: NF10715_low_3
Description: NF10715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10715_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 96 - 273
Target Start/End: Complemental strand, 26799792 - 26799615
Alignment:
| Q |
96 |
gataaaattgtctgtgtataaatactttatattgaagtagcaaaacctgaatcaaacctgagaaatggaggcatttaaagtagcaagtgaaggagttgtt |
195 |
Q |
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| T |
26799792 |
gataaaattgtctgtgtataaatactttatattgaagtagcaaaacctgaatcacacttgagaaatggaggcatttaaagtagcaagtgaaggagttggt |
26799693 |
T |
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| Q |
196 |
atgcaacttgaattcatatggaagaatatcagagaacctttgatagtgccaatgttgagatggacagtgtatttgtgc |
273 |
Q |
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| T |
26799692 |
atgcaacttgagttcatatggaagaatatcagagaacctttgatagtgccaatgttgagatggacagtgtatttgtgc |
26799615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 158 - 273
Target Start/End: Complemental strand, 26823822 - 26823707
Alignment:
| Q |
158 |
aaatggaggcatttaaagtagcaagtgaaggagttgttatgcaacttgaattcatatggaagaatatcagagaacctttgatagtgccaatgttgagatg |
257 |
Q |
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| T |
26823822 |
aaatggaggcatttaaagtagcaagtgaaggagttgttatgcaacttgagttcatatggaagaatatcagagaacctttgatagtgccaatgttgagatg |
26823723 |
T |
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| Q |
258 |
gacagtgtatttgtgc |
273 |
Q |
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| T |
26823722 |
gacagtgtatttgtgc |
26823707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 26799838 - 26799780
Alignment:
| Q |
18 |
agaaggaggtgatttattttatattatagctgttgtactcgtcaaagataaaattgtct |
76 |
Q |
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| T |
26799838 |
agaaggaggtgatttattttatattatagctgttgtactcgtcacagataaaattgtct |
26799780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 255
Target Start/End: Complemental strand, 26786952 - 26786857
Alignment:
| Q |
160 |
atggaggcatttaaagtagcaagtgaaggagttgttatgcaacttgaattcatatggaagaatatcagagaacctttgatagtgccaatgttgaga |
255 |
Q |
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| T |
26786952 |
atggaggtgtttcaagtagctagtgaaggagttggtatgcaacttgcgtttatttggaggaaaataagagaacctttgatcgtgccaatgctgaga |
26786857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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