View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10715_low_6 (Length: 240)

Name: NF10715_low_6
Description: NF10715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10715_low_6
NF10715_low_6
[»] chr4 (6 HSPs)
chr4 (18-240)||(7655144-7655366)
chr4 (30-236)||(7629518-7629724)
chr4 (34-236)||(7616129-7616331)
chr4 (30-224)||(7637976-7638170)
chr4 (30-240)||(7607129-7607339)
chr4 (30-62)||(39089073-39089105)
[»] chr7 (2 HSPs)
chr7 (35-221)||(8935122-8935308)
chr7 (69-221)||(8934215-8934367)
[»] chr3 (2 HSPs)
chr3 (18-236)||(40146393-40146611)
chr3 (88-185)||(40409454-40409551)
[»] chr6 (1 HSPs)
chr6 (135-224)||(6501416-6501505)
[»] chr8 (1 HSPs)
chr8 (178-224)||(15190351-15190397)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 7655144 - 7655366
Alignment:
Q  18 aagtaatcataaaatcgatttaactccatgggatctccaatttctactttatccaaccaataaaaaaggccttctttatcaccatcctttagcatcagac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7655144 aagtaatcataaaatcgatttaactccatgggatctccaatttctactttatccaaccaataaaaaaggccttctttatcaccatcctttagcatcagac 7655243  T
Q  118 caaattcaacggctgaaacactctttatcctctgccctttcctttttccaacctcttgccggtcgtctcaaaattacagaacacgaagacaacactgtct 217  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  7655244 caaattcaacggctgacacactctttatcctcagccctttcctttttccaacctcttgccggtcgtctcaaaattacagaacacgaagacagcattgtct 7655343  T
Q  218 cgtgttctgtaacatgcaataat 240  Q
    |||||||||||||||||||||||    
T  7655344 cgtgttctgtaacatgcaataat 7655366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 7629724 - 7629518
Alignment:
Q  30 aatcgatttaactccatgggatctccaatttctactttatccaaccaataaaaaaggccttctttatcaccatcctttagcatcagaccaaattcaacgg 129  Q
    |||| |||| ||||||||||||||||  |||||||||  | ||||||| ||||| ||||||||||||| ||||||  | | | ||  |||||| ||||||    
T  7629724 aatccatttgactccatgggatctccgctttctacttgtttcaaccaacaaaaagggccttctttatcgccatccggttgtagcaacccaaatccaacgg 7629625  T
Q  130 ctgaaacactctttatcctctgccctttcctttttccaacctcttgccggtcgtctcaaaattacagaacacgaagacaacactgtctcgtgttctgtaa 229  Q
    |||| ||||||| |||||||||||||||||||||| ||||||||||| || |||||  |||| || |||||| | ||||| ||||||||||||||||| |    
T  7629624 ctgagacactctctatcctctgccctttccttttttcaacctcttgctggccgtcttgaaataacggaacacaaggacaatactgtctcgtgttctgtta 7629525  T
Q  230 catgcaa 236  Q
     ||||||    
T  7629524 tatgcaa 7629518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 34 - 236
Target Start/End: Complemental strand, 7616331 - 7616129
Alignment:
Q  34 gatttaactccatgggatctccaatttctactttatccaaccaataaaaaaggccttctttatcaccatcctttagcatcagaccaaattcaacggctga 133  Q
    ||||| ||||||||||||||||  |||||||||  | |||||||   ||| || |||||||||||||||||  | | | |  ||||||| ||||||||||    
T  7616331 gatttgactccatgggatctccggtttctacttggtacaaccaacccaaagggtcttctttatcaccatccagttgaagctaaccaaatccaacggctga 7616232  T
Q  134 aacactctttatcctctgccctttcctttttccaacctcttgccggtcgtctcaaaattacagaacacgaagacaacactgtctcgtgttctgtaacatg 233  Q
     ||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||||| || || ||| | |||||||| |||||||||||||| | |||    
T  7616231 gacactctttgtcctctgcccttgcctttttccaacctctttccggccgtctcaaaataacggagcacaatgacaacaccgtctcgtgttctgttatatg 7616132  T
Q  234 caa 236  Q
    |||    
T  7616131 caa 7616129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 224
Target Start/End: Complemental strand, 7638170 - 7637976
Alignment:
Q  30 aatcgatttaactccatgggatctccaatttctactttatccaaccaataaaaaaggccttctttatcaccatcctttagcatcagaccaaattcaacgg 129  Q
    |||| |||| ||||||||||||||||  | |||||||  |  |||||| ||||| ||||||||||||| ||||||  | | | |  ||||||| ||||||    
T  7638170 aatccatttgactccatgggatctccggtatctacttgttttaaccaacaaaaagggccttctttatcgccatccggttgtagctaaccaaatccaacgg 7638071  T
Q  130 ctgaaacactctttatcctctgccctttcctttttccaacctcttgccggtcgtctcaaaattacagaacacgaagacaacactgtctcgtgttc 224  Q
    |||| ||||||| | ||||| |||||| |||||||||||||||||||||| ||||||||||| || ||||||  |||||||||||| ||||||||    
T  7638070 ctgagacactctctgtcctcagcccttgcctttttccaacctcttgccggccgtctcaaaataacggaacacagagacaacactgtttcgtgttc 7637976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 30 - 240
Target Start/End: Complemental strand, 7607339 - 7607129
Alignment:
Q  30 aatcgatttaactccatgggatctccaatttctactttatccaaccaataaaaaaggccttctttatcaccatcctttagcatcagaccaaattcaacgg 129  Q
    |||| |||| ||||||||||||||||  |||||||||  | ||||||| ||||| |||||||||||||| |||||  | |   ||  |||||| ||||||    
T  7607339 aatccatttgactccatgggatctccgttttctacttgtttcaaccaacaaaaagggccttctttatcatcatccggtggttgcaacccaaatccaacgg 7607240  T
Q  130 ctgaaacactctttatcctctgccctttcctttttccaacctcttgccggtcgtctcaaaattacagaacacgaagacaacactgtctcgtgttctgtaa 229  Q
     ||| ||||||| ||||||||||||||||||||||||||||||||||||| || ||  |||| || |||||   |||||||| |||||| ||||| || |    
T  7607239 ttgagacactctctatcctctgccctttcctttttccaacctcttgccggccgccttgaaataacggaacatagagacaacattgtctcatgttccgtta 7607140  T
Q  230 catgcaataat 240  Q
     ||||||||||    
T  7607139 tatgcaataat 7607129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 39089105 - 39089073
Alignment:
Q  30 aatcgatttaactccatgggatctccaatttct 62  Q
    |||||||||||| ||||||||||||||||||||    
T  39089105 aatcgatttaacaccatgggatctccaatttct 39089073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 35 - 221
Target Start/End: Original strand, 8935122 - 8935308
Alignment:
Q  35 atttaactccatgggatctccaatttctactttatccaaccaataaaaaaggccttctttatcaccatcctttagcatcagaccaaattcaacggctgaa 134  Q
    |||| ||||||||||||||||  |  ||||||  ||||||||| ||||| |||||| |||||||||||||  | | |||  ||||||| ||||||||||     
T  8935122 atttgactccatgggatctccggtcactacttattccaaccaacaaaaagggccttttttatcaccatccggttgtatctaaccaaatccaacggctgag 8935221  T
Q  135 acactctttatcctctgccctttcctttttccaacctcttgccggtcgtctcaaaattacagaacacgaagacaacactgtctcgtg 221  Q
    ||||||| |||| ||  ||||| |||||||||||||||||||||| ||||||||||| || ||| || ||||||| |||||||||||    
T  8935222 acactctctatcttcaacccttgcctttttccaacctcttgccggccgtctcaaaataacggaataccaagacaaaactgtctcgtg 8935308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 69 - 221
Target Start/End: Original strand, 8934215 - 8934367
Alignment:
Q  69 tccaaccaataaaaaaggccttctttatcaccatcctttagcatcagaccaaattcaacggctgaaacactctttatcctctgccctttcctttttccaa 168  Q
    ||||||||| ||||| |||||||||||| |||||||  | | |||  ||||||| |||| ||| | ||||||| |||| ||  ||||| |||||||||||    
T  8934215 tccaaccaacaaaaagggccttctttattaccatccggttgtatctaaccaaatccaacagctaagacactctctatcttcaacccttgcctttttccaa 8934314  T
Q  169 cctcttgccggtcgtctcaaaattacagaacacgaagacaacactgtctcgtg 221  Q
    ||||||| ||||||||||||||| || ||| || ||||||| |||||||||||    
T  8934315 cctcttgtcggtcgtctcaaaataacggaataccaagacaaaactgtctcgtg 8934367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 40146393 - 40146611
Alignment:
Q  18 aagtaatcataaaatcgatttaactccatgggatctccaatttctactttatccaaccaataaaaaaggccttctttatcaccatcctttagcatcagac 117  Q
    |||| |||| ||||| ||||||||||||||||||||||  |  |||||   | || |||  ||||| || |||||||||||||||||| |||   || ||    
T  40146393 aagtgatcaaaaaattgatttaactccatgggatctccggtacctactaattgcacccaccaaaaagggtcttctttatcaccatcctctagtgccaaac 40146492  T
Q  118 caaattcaacggctgaaacactctttatcctctgccctttcctttttccaacctcttgccggtcgtctcaaaattacagaacacgaagacaacactgtct 217  Q
    ||||||||||  |||||||||||| |||| ||| ||||| ||||||||| ||| ||||| || |||||  |||| ||||| ||| | |||||||| || |    
T  40146493 caaattcaacatctgaaacactctctatcttctacccttgcctttttcccaccacttgcaggccgtctagaaataacagatcacaaggacaacaccgttt 40146592  T
Q  218 cgtgttctgtaacatgcaa 236  Q
    | ||||| || ||||||||    
T  40146593 catgttccgtcacatgcaa 40146611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 40409454 - 40409551
Alignment:
Q  88 cttctttatcaccatcctttagcatcagaccaaattcaacggctgaaacactctttatcctctgccctttcctttttccaacctcttgccggtcgtct 185  Q
    |||||| ||||||||||| |||   || ||||||||||||  |||||||||||| |||||||||||||| ||||||||| ||| ||||| || |||||    
T  40409454 cttcttcatcaccatcctctagtgccaaaccaaattcaacatctgaaacactctctatcctctgcccttgcctttttcccaccacttgcaggccgtct 40409551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 6501505 - 6501416
Alignment:
Q  135 acactctttatcctctgccctttcctttttccaacctcttgccggtcgtctcaaaattacagaacacgaagacaacactgtctcgtgttc 224  Q
    ||||||||||||||||| |||| ||||||||||||| ||||| || ||||||||||| || ||| |||||||||||| ||| || |||||    
T  6501505 acactctttatcctctgtccttgcctttttccaaccacttgcgggccgtctcaaaatgacggaaaacgaagacaacaatgtttcatgttc 6501416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 15190351 - 15190397
Alignment:
Q  178 ggtcgtctcaaaattacagaacacgaagacaacactgtctcgtgttc 224  Q
    ||||||||| ||||||||||||||||||| |||||| | ||||||||    
T  15190351 ggtcgtctcgaaattacagaacacgaagataacactatttcgtgttc 15190397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University