View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10715_low_9 (Length: 229)
Name: NF10715_low_9
Description: NF10715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10715_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 47980558 - 47980360
Alignment:
| Q |
14 |
cagagacaaaaccacttcctgcagcctgtggagatgctggtaatcctaagaaaatctttgttgctggaataccattaatccattctttccatgcattttc |
113 |
Q |
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| T |
47980558 |
cagaaacaaaaccacttcctgcagcctgtggagatgctggtaatcctaagaaaatctttgttgctggaatatcattaatccattctttccatgcattttc |
47980459 |
T |
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| Q |
114 |
aagattaccaacatctgcagaagaatattgacaaggtggattgttgtaaaattgcacccaaacatagtcaaaaagacctgtcttaagggcctctccaag |
212 |
Q |
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| T |
47980458 |
aagattaccaacatctgcagaagaatgttgacaaggtggattgttgtaaaattgcacccaaacatagtcaaaaagacctgtcttaagggcctctccaag |
47980360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 48222343 - 48222384
Alignment:
| Q |
153 |
attgttgtaaaattgcacccaaacatagtcaaaaagacctgt |
194 |
Q |
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| T |
48222343 |
attgttgtaaaattgaacccaaacatagtcaaatagtcctgt |
48222384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 44838331 - 44838275
Alignment:
| Q |
138 |
atattgacaaggtggattgttgtaaaattgcacccaaacatagtcaaaaagacctgt |
194 |
Q |
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| T |
44838331 |
atattgacaaggaggattattgtaaaattgtacccaaacaaagtcaaaaagacctgt |
44838275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 24367486 - 24367541
Alignment:
| Q |
139 |
tattgacaaggtggattgttgtaaaattgcacccaaacatagtcaaaaagacctgt |
194 |
Q |
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| T |
24367486 |
tattgacaaggagggttgttgtagaattgtacccaaacataatcaaaaagtcctgt |
24367541 |
T |
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