View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10716_high_10 (Length: 284)
Name: NF10716_high_10
Description: NF10716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10716_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 18133514 - 18133260
Alignment:
| Q |
16 |
aattttcaagttctgtaaagaattataacattaccgattgaaggaagaactttttcgtcgtattcgagaccgagattctgaacaatggtaggtaaattct |
115 |
Q |
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| T |
18133514 |
aattttcaagttctgtaaagaattataacattaccgattgaaggaagaactttttcgtcgtattcgagaccgagattctgaacaatggtaggtaaattct |
18133415 |
T |
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| Q |
116 |
cagtatcaggacgagaaagaacacggagagttaggttaaccatttgaagatctttggtgccagagattgaagagaatgtgtggggacgagttttgatatc |
215 |
Q |
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| T |
18133414 |
cagtatcaggacgagaaagaacacggagagttaggttaaccatttgaagatctttggtgccagagattgaagagaatgtgtggggacgagttttgatatc |
18133315 |
T |
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| Q |
216 |
gaagatgtaaggcttttgaacccatgggatgaggaaatgggttccttcaccgatt |
270 |
Q |
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| T |
18133314 |
gaagatgtaaggcttttgaacccatgggatgaggaaatgggttccttcaccgatt |
18133260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 45 - 268
Target Start/End: Original strand, 1384998 - 1385221
Alignment:
| Q |
45 |
attaccgattgaaggaagaactttttcgtcgtattcgagaccgagattctgaacaatggtaggtaaattctcagtatcaggacgagaaagaacacggaga |
144 |
Q |
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| T |
1384998 |
attaccgatggaaggaagaaccttctcgtcatattcaagaccgagattctgaacaatagtaggaagacgttcagtatcaggacgagagagaacacgaaga |
1385097 |
T |
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| Q |
145 |
gttaggttaaccatttgaagatctttggtgccagagattgaagagaatgtgtggggacgagttttgatatcgaagatgtaaggcttttgaacccatggga |
244 |
Q |
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| T |
1385098 |
gtgagattcaccatctgaagatctttggtaccggagatggatgagaatgtgtgaggtcgagtgcggatatcgaagacgtaaggcttttgaacccatggga |
1385197 |
T |
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| Q |
245 |
tgaggaaatgggttccttcaccga |
268 |
Q |
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| T |
1385198 |
tgaggaaatgagttccttcaccga |
1385221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 40614842 - 40614793
Alignment:
| Q |
217 |
aagatgtaaggcttttgaacccatgggatgaggaaatgggttccttcacc |
266 |
Q |
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|||||||| |||||||||||||||||||| |||||||| ||||||||||| |
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| T |
40614842 |
aagatgtagggcttttgaacccatgggatcaggaaatgagttccttcacc |
40614793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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