View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10716_high_17 (Length: 238)
Name: NF10716_high_17
Description: NF10716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10716_high_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 5620649 - 5620429
Alignment:
| Q |
15 |
atgtggcccagcagcactgcataagaaatactacctccttatcaggagtaagcaaaaaagataatttgctgttttttcagaataacctgctgtttaactt |
114 |
Q |
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| T |
5620649 |
atgtggcccagcagcactgcataagaaatac---ctccttatcaggagtaagcaaaaaagataatttgctgttttttcagaataacctactgtttaactt |
5620553 |
T |
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| Q |
115 |
acaaaaactatgagctgatcatgtcatttatctgtccagagtccagactgtaatcctaatgtttcacttaaatgatgaattgagctcattacagaaattt |
214 |
Q |
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| T |
5620552 |
acaaaaactatgagctgatcatgtcatttatctgtccagagtccagactgtaattctaatgtttcacttaaatgatgaattgagctcattacagaaattt |
5620453 |
T |
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| Q |
215 |
gtcaagagaatatacttcatcaac |
238 |
Q |
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| T |
5620452 |
gtcaagagaatatacttcatcaac |
5620429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 233
Target Start/End: Original strand, 21424942 - 21425095
Alignment:
| Q |
74 |
gataatttgctgttttttcagaataacctgctgtttaacttacaaaaactatgagctgatcatgtcatttatctgtccagagtccagactgtaatcctaa |
173 |
Q |
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| T |
21424942 |
gataattggctgttttttcacaata-----ctgtttaacttacatatattatgagcttatcatgtcatttatctgtctagagtgcaaactgtaatcctaa |
21425036 |
T |
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| Q |
174 |
tgtttcacttaaatgatgaattgagctcattacagaaatttgtcaagagaatatacttca |
233 |
Q |
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| T |
21425037 |
tgtatcatttatgt-atcaattaagatcattacaaaaacttgtcaagagaatatacttca |
21425095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 233
Target Start/End: Original strand, 30636142 - 30636293
Alignment:
| Q |
74 |
gataatttgctgttttttcagaataacctgctgtttaacttacaaaaactatgagctgatcatgtcatttatctgtccagagtccagactgtaatcctaa |
173 |
Q |
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||||||| |||||||||||| |||| |||||||||||||| | |||||||| ||||||||||||||||||| ||||| || ||||||||||||| |
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| T |
30636142 |
gataattggctgttttttcacaata-----ctgtttaacttacatat--tatgagcttatcatgtcatttatctgtctagagtgcaaactgtaatcctaa |
30636234 |
T |
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| Q |
174 |
tgtttcacttaaatgatgaattgagctcattacagaaatttgtcaagagaatatacttca |
233 |
Q |
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||| ||| ||| | || |||| || |||||||| ||| ||||||||||||||||||||| |
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| T |
30636235 |
tgtctcatttatgt-atcaattaagatcattacaaaaacttgtcaagagaatatacttca |
30636293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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