View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10716_high_18 (Length: 234)
Name: NF10716_high_18
Description: NF10716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10716_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 39174616 - 39174395
Alignment:
| Q |
1 |
ccaattcaatgatttctttttcgttctttcaagtattatatatcagtttaatgtattggaaataatgttatatgaatattatactattcaataggataag |
100 |
Q |
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| T |
39174616 |
ccaattcaatgatttctttttcgttctttcaagtattatatatcattgtaatgtattggaaataatgttatatgaatat-atacgattcaataggataag |
39174518 |
T |
|
| Q |
101 |
tagtttacacttttgttatcaaattgagagtcggtagagagactttaagcataagtttcagatttttgaatcataaattaactttcaataaggccatggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39174517 |
tagtttacacttttgttatcaaattgagagtcggtagagagactttaagcataagtttcagatttttgaatcataaattaactttcaataaggccatggg |
39174418 |
T |
|
| Q |
201 |
acttagcacaattacatttagcg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
39174417 |
acttagcacaattacatttagcg |
39174395 |
T |
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