View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10716_high_4 (Length: 362)

Name: NF10716_high_4
Description: NF10716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10716_high_4
NF10716_high_4
[»] chr2 (5 HSPs)
chr2 (122-362)||(19175262-19175502)
chr2 (23-118)||(3935375-3935470)
chr2 (29-118)||(38978382-38978471)
chr2 (23-118)||(25697570-25697665)
chr2 (29-79)||(32339602-32339652)
[»] chr8 (14 HSPs)
chr8 (23-118)||(1668126-1668221)
chr8 (23-118)||(16658841-16658936)
chr8 (23-118)||(38521229-38521324)
chr8 (23-118)||(22432294-22432389)
chr8 (23-118)||(29182578-29182673)
chr8 (23-114)||(22014860-22014951)
chr8 (23-118)||(27576784-27576885)
chr8 (23-118)||(774683-774779)
chr8 (27-118)||(6786458-6786550)
chr8 (23-112)||(11472358-11472451)
chr8 (23-118)||(42808688-42808783)
chr8 (27-118)||(33360398-33360489)
chr8 (23-75)||(780365-780417)
chr8 (56-118)||(43916122-43916184)
[»] chr5 (9 HSPs)
chr5 (23-118)||(3174185-3174280)
chr5 (23-118)||(10572724-10572819)
chr5 (23-118)||(32863665-32863760)
chr5 (23-118)||(19209115-19209210)
chr5 (23-118)||(43300195-43300290)
chr5 (23-118)||(23737903-23737998)
chr5 (24-118)||(22273148-22273242)
chr5 (27-118)||(41958605-41958696)
chr5 (27-70)||(18739410-18739453)
[»] chr4 (14 HSPs)
chr4 (23-118)||(13740255-13740350)
chr4 (23-118)||(23218223-23218318)
chr4 (23-118)||(45143993-45144088)
chr4 (23-118)||(45152762-45152857)
chr4 (24-118)||(54785192-54785286)
chr4 (23-118)||(21604447-21604542)
chr4 (23-118)||(46164369-46164464)
chr4 (23-118)||(47825929-47826024)
chr4 (23-118)||(21355888-21355983)
chr4 (23-118)||(8432983-8433078)
chr4 (27-114)||(38115466-38115557)
chr4 (23-118)||(14800000-14800095)
chr4 (29-76)||(33753972-33754019)
chr4 (23-80)||(3187589-3187646)
[»] chr3 (6 HSPs)
chr3 (23-118)||(52893452-52893547)
chr3 (23-118)||(21239456-21239551)
chr3 (23-118)||(9456435-9456530)
chr3 (23-118)||(2338819-2338912)
chr3 (24-118)||(40922977-40923071)
chr3 (24-118)||(2733794-2733888)
[»] scaffold0393 (1 HSPs)
scaffold0393 (23-118)||(11172-11267)
[»] chr7 (6 HSPs)
chr7 (23-118)||(6472247-6472342)
chr7 (23-118)||(9371828-9371923)
chr7 (23-118)||(21358025-21358120)
chr7 (24-118)||(35012978-35013072)
chr7 (23-118)||(44660330-44660425)
chr7 (32-118)||(31419281-31419367)
[»] chr1 (9 HSPs)
chr1 (23-118)||(29599254-29599349)
chr1 (23-118)||(324700-324795)
chr1 (23-118)||(26355026-26355122)
chr1 (22-118)||(17480989-17481085)
chr1 (23-118)||(48184260-48184349)
chr1 (27-102)||(26014504-26014579)
chr1 (30-114)||(6165049-6165133)
chr1 (30-114)||(16764537-16764621)
chr1 (30-112)||(10801568-10801650)
[»] chr6 (3 HSPs)
chr6 (23-118)||(32397253-32397349)
chr6 (24-118)||(7171048-7171142)
chr6 (48-118)||(9303026-9303095)
[»] scaffold1160 (1 HSPs)
scaffold1160 (23-118)||(2488-2577)
[»] scaffold0285 (1 HSPs)
scaffold0285 (30-114)||(8383-8467)
[»] scaffold0054 (1 HSPs)
scaffold0054 (30-114)||(2888-2972)
[»] scaffold1300 (1 HSPs)
scaffold1300 (23-114)||(925-1020)
[»] scaffold1084 (1 HSPs)
scaffold1084 (27-114)||(1228-1319)
[»] scaffold0005 (1 HSPs)
scaffold0005 (23-118)||(39632-39727)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 122 - 362
Target Start/End: Original strand, 19175262 - 19175502
Alignment:
Q  122 cacagacataggacacaacattgacaccgacacatgacataaataataatttattgtaattatatgtgttgttataggacactaaacaatctttcaatac 221  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  19175262 cacagacataggacacaacattgacactgacacatgacacaaataataatttattgtaattatatgcgttgttgtaggacactaaacaatctttcaatac 19175361  T
Q  222 gaagtgtctctactaaacacagatacaaaggacaaagtatattaattggtctaaaaaagcaataaaatattttgagaatataaacttttaaaccataaaa 321  Q
    ||||||||||||||| | ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19175362 gaagtgtctctactacatacacatacaaaggatatagtatattaattggtctaaaaaagcaataaaatattttgagaatataaactttttaaccataaaa 19175461  T
Q  322 ttctttcaacactactgcatagagtttagagactggtctca 362  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  19175462 ttctttcaacactactccatagagtttagagactggtctca 19175502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 3935375 - 3935470
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3935375 aaagaacatgtaatcatcaaattataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 3935470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 38978382 - 38978471
Alignment:
Q  29 catgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38978382 catgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacactaccttacaagttacaacaattagggtttgtggag 38978471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 25697570 - 25697665
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25697570 aaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagtaacaacaattagggtttgtggag 25697665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 32339652 - 32339602
Alignment:
Q  29 catgtaatcatcaaatcataatcataattgaaggaaattacattcaatttc 79  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  32339652 catgtaatcatcaaatcagaatcataattgaagaaaattacattcaatttc 32339602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 5e-47; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 1668221 - 1668126
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1668221 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 1668126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 16658936 - 16658841
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16658936 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 16658841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 38521229 - 38521324
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38521229 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 38521324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 22432294 - 22432389
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22432294 aaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 22432389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 29182578 - 29182673
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29182578 aaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 29182673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 22014951 - 22014860
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 114  Q
    |||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22014951 aaagaatatgtaatcatcaaacaataatcataattgaaggaaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 22014860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 27576885 - 27576784
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataat------tgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtgg 116  Q
    |||||||||||||||||||||||| ||||| |||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27576885 aaagaacatgtaatcatcaaatcagaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtgg 27576786  T
Q  117 ag 118  Q
    ||    
T  27576785 ag 27576784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 774683 - 774779
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaa-tttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||| |||| |||| ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  774683 aaagaacatgtaattatcatatcagaatcagaattgaaggaaattacattcaaatttcacattaccttataagttacaacaattagggtttgtggag 774779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 6786550 - 6786458
Alignment:
Q  27 aacatgtaatcatcaaatcataatcataattgaaggaaattacattcaa-tttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  6786550 aacatgtaatcatcaaatcaaaatcagaattgaaggaagttacattcaaatttcacattaccttacaagttacagcaattagggtttgtggag 6786458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 11472358 - 11472451
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataat----tgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggttt 112  Q
    ||||||||||||||||||| |||| |||||||||    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11472358 aaagaacatgtaatcatcatatcagaatcataattaattgaaggaaattacattcaatttcacattaccttacaaattacaacaattagggttt 11472451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 42808783 - 42808688
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||||||||||||| |  ||||||||| |||||||||| |||||||||||||| |||||||| ||| |||||| |||||||||||||||||    
T  42808783 aaagaacatgtaatcatcagagaataatcatatttgaaggaaaatacattcaatttcatattaccttgcaatttacaagaattagggtttgtggag 42808688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 33360489 - 33360398
Alignment:
Q  27 aacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||||||||| |  ||||||||| |||||||||| |||||||||||||| |||| ||| ||| |||| | |||||||||||||||||    
T  33360489 aacatgtaatcatcagagaataatcatatttgaaggaaaatacattcaatttcatattaacttgcaatttaccagaattagggtttgtggag 33360398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 780365 - 780417
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaa 75  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  780365 aaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 780417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 43916184 - 43916122
Alignment:
Q  56 ttgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||||||||||| || |||||||| |||||||| |||||||||| ||||||| |||||    
T  43916184 ttgaaggaaattacattaaaattcacatttccttacaatttacaacaatcagggtttatggag 43916122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 3174280 - 3174185
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3174280 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 3174185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 10572819 - 10572724
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10572819 aaagaacatgtaatcatcaaatcagaatcacaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 10572724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 32863760 - 32863665
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32863760 aaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 32863665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 19209115 - 19209210
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||||||||||| ||| || ||||| | |||||||||||||||||||||||||| ||||||||| | |||||||||||||||||| |||||    
T  19209115 aaagaacatgtaatcattaaagcagaatcagatttgaaggaaattacattcaatttcacgttaccttacgatttacaacaattagggtttatggag 19209210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 43300290 - 43300195
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||||||||||| |||  | ||||| ||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| |||||    
T  43300290 aaagaacatgtaatcattaaagaaaaatcagaattgaacgaaattacattcaatttcacattaccttataatttacaacaattagggtttatggag 43300195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 23737998 - 23737903
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||||||||||| |||  | ||||| | |||||||||||||||||||||||||  ||||||||||| |||||||||||||||||| |||||    
T  23737998 aaagaacatgtaatcattaaagaagaatcagatttgaaggaaattacattcaatttcatgttaccttacaatttacaacaattagggtttatggag 23737903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 22273148 - 22273242
Alignment:
Q  24 aagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||| |  ||||||||| |||||||||| || ||||||||||  |||||||| ||| |||||| |||||||||||||||||    
T  22273148 aagaacatgtaatcatcagagaataatcatatttgaaggaaaatagattcaatttcttattaccttgcaatttacaagaattagggtttgtggag 22273242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 41958605 - 41958696
Alignment:
Q  27 aacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||||||| |||  | ||||| ||||||| ||||||||||||||||||||||||||||  || | |||||||||||||||| |||||    
T  41958605 aacatgtaatcattaaagaaaaatcagaattgaacgaaattacattcaatttcacattaccttgtaattaacaacaattagggtttatggag 41958696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 18739410 - 18739453
Alignment:
Q  27 aacatgtaatcatcaaatcataatcataattgaaggaaattaca 70  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  18739410 aacatgtaatcatcaaatcagaatcataattgaaggaaattaca 18739453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 13740255 - 13740350
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13740255 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 13740350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 23218223 - 23218318
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23218223 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 23218318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 45144088 - 45143993
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45144088 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 45143993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 45152857 - 45152762
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45152857 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 45152762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 54785192 - 54785286
Alignment:
Q  24 aagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54785192 aagaacatgtaatcatcaaatcagaatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 54785286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 21604542 - 21604447
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21604542 aaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 21604447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 46164369 - 46164464
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46164369 aaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 46164464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 47826024 - 47825929
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47826024 aaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 47825929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 21355983 - 21355888
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21355983 aaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacgttaccttacaagttacaacaattagggtttgtggag 21355888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 8432983 - 8433078
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8432983 aaagaacatgtaatcatcaaatcagaatcagaattgaaggaaataacattcaatttcacattaccttacaagtaacaacaattagggtttgtggag 8433078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 38115557 - 38115466
Alignment:
Q  27 aacatgtaatcatcaaatcataatcataatt----gaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 114  Q
    ||||||||||||||| |||| ||||||||||    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38115557 aacatgtaatcatcatatcagaatcataattaattgaaggaaattacattcaatttcacattaccttacaaattacaacaattagggtttgt 38115466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 14800000 - 14800095
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||| |||||||||| |  ||||||||| |||||||||| |||||| ||||||| ||||||||  || |||||| |||||||||||||||||    
T  14800000 aaagaacacgtaatcatcagagaataatcatatttgaaggaaaatacatttaatttcatattaccttgaaatttacaaaaattagggtttgtggag 14800095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 33753972 - 33754019
Alignment:
Q  29 catgtaatcatcaaatcataatcataattgaaggaaattacattcaat 76  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||    
T  33753972 catgtaatcatcaaatcaaaatcataattgaagaaaattacattcaat 33754019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 3187589 - 3187646
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttca 80  Q
    |||||||||||||||||||||  | ||||| | || ||||||| ||||||||||||||    
T  3187589 aaagaacatgtaatcatcaaagaagaatcagatttaaaggaaaatacattcaatttca 3187646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 52893547 - 52893452
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52893547 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 52893452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 21239551 - 21239456
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21239551 aaagaacatgtaatcatcaaatcataatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 21239456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 9456530 - 9456435
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9456530 aaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattacctttcaagttacaacaattagggtttgtggag 9456435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 2338819 - 2338912
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2338819 aaagaacatgtaata--caaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 2338912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 40923071 - 40922977
Alignment:
Q  24 aagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||| |  ||||||||| |||||||||| |||||||||||||  |||||||| ||| |||||| |||||||||||||||||    
T  40923071 aagaacatgtaatcatcagagaataatcatatttgaaggaaaatacattcaatttcttattaccttgcaatttacaagaattagggtttgtggag 40922977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 2733888 - 2733794
Alignment:
Q  24 aagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||| |  ||||||||| |||||||||| || ||||||||||  |||||||| ||| |||||| |||||||||||||||||    
T  2733888 aagaacatgtaatcatcagagaataatcatatttgaaggaaaatagattcaatttcttattaccttgcaatttacaagaattagggtttgtggag 2733794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 11172 - 11267
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11172 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattaggatttgtggag 11267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 6472247 - 6472342
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6472247 aaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 6472342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 9371923 - 9371828
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9371923 aaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 9371828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 21358025 - 21358120
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21358025 aaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 21358120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 35012978 - 35013072
Alignment:
Q  24 aagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||||||| ||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35012978 aagaacatgtaattatcaaatcagaatcaggattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 35013072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 44660425 - 44660330
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||||||||||| |||  | ||||| ||||||| ||||||||||||||||||||||||||||| || ||| |||||||||||||| |||||    
T  44660425 aaagaacatgtaatcattaaagaaaaatcagaattgaacgaaattacattcaatttcacattaccttataatttagaacaattagggtttatggag 44660330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 31419367 - 31419281
Alignment:
Q  32 gtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||| |  ||||||||| |||||||||| |||||||||||||  |||||||| ||| |||||| |||||||||||||||||    
T  31419367 gtaatcatcagagaataatcatatttgaaggaaaatacattcaatttcttattaccttgcaatttacaagaattagggtttgtggag 31419281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 29599254 - 29599349
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29599254 aaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 29599349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 324795 - 324700
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  324795 aaagaacatctaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggcttgtggag 324700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 26355122 - 26355026
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaa-tttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26355122 aaagaacatgtaatcatcaaatcagaatcagaattgaaggaagttacattcaaatttcacattaccttacaagttacaacaattagggtttgtggag 26355026  T

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Target: chr1; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 17480989 - 17481085
Alignment:
Q  22 caaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||||||||||||||||  ||||||||| |||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |||||||||    
T  17480989 caaagaacatgtaatcatcaaagaataatcatatttgaaggaaaatacattcaatttcacattaccttacaatttacaagaattaggatttgtggag 17481085  T

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Target: chr1; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 48184349 - 48184260
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||||||| |||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48184349 aaagaacatgtaatcatcaaatcagaat------tgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 48184260  T

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Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 26014579 - 26014504
Alignment:
Q  27 aacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaaca 102  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26014579 aacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaaca 26014504  T

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Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 6165049 - 6165133
Alignment:
Q  30 atgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 114  Q
    ||||||||||||||||| ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6165049 atgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 6165133  T

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Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 16764537 - 16764621
Alignment:
Q  30 atgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 114  Q
    ||||||||||||||||| ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16764537 atgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 16764621  T

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Target: chr1; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 10801568 - 10801650
Alignment:
Q  30 atgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggttt 112  Q
    ||||||||||||||||| ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10801568 atgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggttt 10801650  T

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Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 32397349 - 32397253
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattc-aatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  32397349 aaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaaatttcacattaccttataagttacaacaattagggtttgtggag 32397253  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 7171142 - 7171048
Alignment:
Q  24 aagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||||||||||||| |  ||||||||| |||||||||| || ||||||||||  |||||||| ||| |||||| |||||||||||||||||    
T  7171142 aagaacatgtaatcatcagagaataatcatatttgaaggaaaatagattcaatttcttattaccttgcaatttacaagaattagggtttgtggag 7171048  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 9303095 - 9303026
Alignment:
Q  48 aatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  9303095 aatcaaaattgaaggaaattacattcaatttcacattacctttcaagtt-taacaattagggtttgtggag 9303026  T

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Target: scaffold1160 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 2577 - 2488
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    ||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2577 aaagaacatgtaatcatcaaatcataat------tgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 2488  T

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Target: scaffold0285 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 8383 - 8467
Alignment:
Q  30 atgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 114  Q
    ||||||||||||||||| ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8383 atgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 8467  T

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Target: scaffold0054 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 2972 - 2888
Alignment:
Q  30 atgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 114  Q
    ||||||||||||||||| ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2972 atgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 2888  T

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Target: scaffold1300 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 925 - 1020
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattga----aggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 114  Q
    ||||||||| ||||||||| |||| |||||||||| |    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  925 aaagaacatataatcatcatatcagaatcataattaattaaaggaaattacattcaatttcacattaccttacaaattacaacaattagggtttgt 1020  T

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Target: scaffold1084 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold1084
Description:

Target: scaffold1084; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 1319 - 1228
Alignment:
Q  27 aacatgtaatcatcaaatcataatcataatt----gaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 114  Q
    ||||||||||||||| |||| ||||||||||    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  1319 aacatgtaatcatcatatcagaatcataattaattgaaggaaattacattcaatttcacattaccttacaaattacaacaattagtgtttgt 1228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 39727 - 39632
Alignment:
Q  23 aaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggag 118  Q
    |||||||| |||||||||| |  ||||||||| |||||||||| |||||| ||||||| ||||||||  || |||||| |||||||||||||||||    
T  39727 aaagaacacgtaatcatcagagaataatcatatttgaaggaaaatacatttaatttcatattaccttgaaatttacaaaaattagggtttgtggag 39632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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