View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10716_high_8 (Length: 306)
Name: NF10716_high_8
Description: NF10716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10716_high_8 |
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| [»] scaffold0496 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 128 - 303
Target Start/End: Original strand, 39174049 - 39174224
Alignment:
| Q |
128 |
tctatgaagcgaacctcacacaatgtccttcagtcttgtaccaaggagactcgagtcttcgcctaggtccttttggccaactctcaacttgaagtggaca |
227 |
Q |
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| T |
39174049 |
tctataaagcgaacctcgcacaatgtccttcagtcttgtaccaaggagactcgagtcttcgcctaggtccttttggccaactctcaacttgaagtggaca |
39174148 |
T |
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| Q |
228 |
ggccagtatggtgcagctatcaacccaacttggcaaattctaagccattttccattacatcgggtgtgtgtacaaa |
303 |
Q |
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| T |
39174149 |
ggccagtatggtgcagctatcaacccaacttggcaaattctaagccattttccattacatcgggtgtgtgtacaaa |
39174224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 39173661 - 39173708
Alignment:
| Q |
84 |
attacattatgtcaaaacctataataacatgaattaatagagattcta |
131 |
Q |
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| T |
39173661 |
attacattatgtcaaaacctataataacatgaattaatagagattcta |
39173708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 39173625 - 39173673
Alignment:
| Q |
18 |
ctatgtgagatctattaaaatgttaagttttaacacattacattatgtc |
66 |
Q |
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| T |
39173625 |
ctatatgagatctattaaaatgttaagttttaacagattacattatgtc |
39173673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 141 - 282
Target Start/End: Original strand, 46621479 - 46621620
Alignment:
| Q |
141 |
cctcacacaatgtccttcagtcttgtaccaaggagactcgagtcttcgcctaggtccttttggccaactctcaacttgaagtggacaggccagtatggtg |
240 |
Q |
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| T |
46621479 |
cctcacacagtgccctccagtctaggaccaaggagactcaagccttcgcctaggtcacattggccaactctcaacttggagtgggcaggccagcatggtg |
46621578 |
T |
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| Q |
241 |
cagctatcaacccaacttggcaaattctaagccattttccat |
282 |
Q |
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| T |
46621579 |
cagccaccaacccaacctggcaaatcttaagccatgttccat |
46621620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 282
Target Start/End: Original strand, 46627237 - 46627353
Alignment:
| Q |
167 |
accaaggagactcgagtcttcgcctaggtccttttggcc-aactctcaacttgaagtggacaggccagtatggtgcagctatcaacccaacttggcaaat |
265 |
Q |
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| T |
46627237 |
accaaggagactcaagccttcgcctaggtcccattggcccaactctcaacttggagcgggcaggccggcatggtgcagccaccaacccaacctggcaaat |
46627336 |
T |
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| Q |
266 |
tctaagccattttccat |
282 |
Q |
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| T |
46627337 |
cctaagccatgttccat |
46627353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 158 - 281
Target Start/End: Complemental strand, 37147642 - 37147519
Alignment:
| Q |
158 |
cagtcttgtaccaaggagactcgagtcttcgcctaggtccttttggccaactctcaacttgaagtggacaggccagtatggtgcagctatcaacccaact |
257 |
Q |
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| T |
37147642 |
cagtctaggaccaaggagactcaagccttcgcctaggtcccattggccaactctcaacttggagtgggcaggccagcatggtgcagccactaacccaacc |
37147543 |
T |
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| Q |
258 |
tggcaaattctaagccattttcca |
281 |
Q |
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| T |
37147542 |
tggcaaatcctaagccatgttcca |
37147519 |
T |
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Target: scaffold0496 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 12298 - 12380
Alignment:
| Q |
183 |
tcttcgcctaggtccttttggccaactctcaacttgaagtggacaggccagtatggtgcagctatcaacccaacttggcaaat |
265 |
Q |
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||||||||||||||| ||| ||||||||||||||| ||||| |||||||| || ||| || ||||||||||| || ||||| |
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| T |
12298 |
tcttcgcctaggtcccattgaccaactctcaacttggagtggtcaggccagcatagtgaagtcatcaacccaacatgacaaat |
12380 |
T |
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