View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10716_low_1 (Length: 449)
Name: NF10716_low_1
Description: NF10716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10716_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 506564 - 506133
Alignment:
| Q |
1 |
aaacaacaatacaaaaacatcagggtgccgtatacaggcgaaacaccccaatcaattaaaccaccaaaaaccagaaaaaagggggcgcacatattaataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
506564 |
aaacaacaatacaaaaacatcagggtgccgtatataggcgaaacaccccaatcaaataaaccaccaaaaaccagaaaaaagggggcgcacatattaataa |
506465 |
T |
|
| Q |
101 |
gtgaaattgaacattctgnnnnnnnnnatgcaacatcctgcttgttagttgcaataccatagacaaatatgataaaccaattatcctaactaagttttat |
200 |
Q |
| |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||| |
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| T |
506464 |
ttgaaattgaacattctatttttgtttatgcgacatcctgcttgttagttgcaataccatagacaaatgtggtaaaccaattatcctaactaacttttat |
506365 |
T |
|
| Q |
201 |
gtttgcatttgcagttcaataattgaacaatttgctagcacagtttccaaccttgcacaaatattagctaatatcctagcagagaaattgggtcaccaat |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
506364 |
gtttgcatttgcagttcaataattgaacaatttgctaccacagtttccaaccttgcacaaatattagctaatatcctagcagagaaattgggtcaccaat |
506265 |
T |
|
| Q |
301 |
catctttctttaaggagaattgcttgcccaacacatgttatcttagattgaacagatatcctccatgtcccattgattttaggattcatggcctaatgcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
506264 |
catctttctttaaggagaattgcttgcccaacacatgttatcttagattgaacagatatcctccatgtcccattgattttaggattcatggcctaatgcc |
506165 |
T |
|
| Q |
401 |
acatactgatagtgacttccttaccatattat |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
506164 |
acatactgatagtgacttccttaccatattat |
506133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 208 - 430
Target Start/End: Complemental strand, 16703181 - 16702959
Alignment:
| Q |
208 |
tttgcagttcaataattgaacaatttgctagcacagtttccaaccttgcacaaatattagctaatatcctagcagagaaattgggtcaccaatcatcttt |
307 |
Q |
| |
|
||||||| |||| ||||||||||||||||| || | |||||||||||||||| |||||| |||| ||||| || ||| |||| || ||||| ||| |
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|
| T |
16703181 |
tttgcagatcaacaattgaacaatttgctatcatatcatccaaccttgcacaaactttagctcatattctagctgaaaaaatggggcatgaatcaactta |
16703082 |
T |
|
| Q |
308 |
ctttaaggagaattgcttgcccaacacatgttatcttagattgaacagatatcctccatgtcccattgattttaggattcatggcctaatgccacatact |
407 |
Q |
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||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| || | || | ||||||||| ||||||||||| ||| |
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|
| T |
16703081 |
ttttaaggagaattgcttgcccaatacttgttatcttcgattgaacagatatcctccatgtcctatagcttctgagattcatggtctaatgccacacact |
16702982 |
T |
|
| Q |
408 |
gatagtgacttccttaccatatt |
430 |
Q |
| |
|
|||||||||||||| || ||||| |
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|
| T |
16702981 |
gatagtgacttcctaactatatt |
16702959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 208 - 430
Target Start/End: Complemental strand, 17677417 - 17677195
Alignment:
| Q |
208 |
tttgcagttcaataattgaacaatttgctagcacagtttccaaccttgcacaaatattagctaatatcctagcagagaaattgggtcaccaatcatcttt |
307 |
Q |
| |
|
||||||| |||| ||||||||||||||||| || | |||||||||||||||| |||||| |||| ||||| || ||| |||| || ||||| ||| |
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|
| T |
17677417 |
tttgcagatcaacaattgaacaatttgctatcatatcatccaaccttgcacaaactttagctcatattctagctgaaaaaatggggcatgaatcaactta |
17677318 |
T |
|
| Q |
308 |
ctttaaggagaattgcttgcccaacacatgttatcttagattgaacagatatcctccatgtcccattgattttaggattcatggcctaatgccacatact |
407 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| || | || | ||||||||| ||||||||||| ||| |
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|
| T |
17677317 |
ttttaaggagaattgcttgcccaatacttgttatcttcgattgaacagatatcctccatgtcctatagcttctgagattcatggtctaatgccacacact |
17677218 |
T |
|
| Q |
408 |
gatagtgacttccttaccatatt |
430 |
Q |
| |
|
|||||||||||||| || ||||| |
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|
| T |
17677217 |
gatagtgacttcctaactatatt |
17677195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 3595157 - 3595067
Alignment:
| Q |
1 |
aaacaacaatacaaaaacat-cagggtgccgtatacaggcgaaacaccccaatcaattaaaccaccaaaaaccagaaaaaagggggcgcaca |
91 |
Q |
| |
|
||||||||||| ||||||| ||||||||| | || ||||| ||||||||| | || ||||||||||||||||||||||| |||| ||||| |
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| T |
3595157 |
aaacaacaatataaaaacaaacagggtgccttctataggcggcacaccccaa-ctataaaaccaccaaaaaccagaaaaaatggggggcaca |
3595067 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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