View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10716_low_12 (Length: 276)
Name: NF10716_low_12
Description: NF10716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10716_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 265
Target Start/End: Original strand, 30276353 - 30276602
Alignment:
| Q |
16 |
aataagttgttgaatatttcttttgaatagtttttaacttttaacttacaagtaaagcaaataaataagagattaattttgatgtatcgtcagtgtaaaa |
115 |
Q |
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| T |
30276353 |
aataagttgttgaatatttcttttgaatagtttttaacttttaacttacaagtaaagcaaataaataagagattaattttgatgcatcgtcagtgtaaaa |
30276452 |
T |
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| Q |
116 |
cattttatcctttaccgatcacaaaccatcctttatatgccttttaaggaagatatgattgaaatcaaatgttttaaatgatccaacaattgtgatagat |
215 |
Q |
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| T |
30276453 |
cattttatactctaccaatcacaaaccatcctttatatcccttttaaggcatatatgattgaaatcaaatgttttaaatgatccaacaattgtgattgat |
30276552 |
T |
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| Q |
216 |
tgacagtgtaatgaattggtatatacctcaattcagaagatcgacttctt |
265 |
Q |
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| T |
30276553 |
tgacagtgtaatgaattggtatatacctcaattcagaagatcgacttctt |
30276602 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 39156659 - 39156752
Alignment:
| Q |
133 |
atcacaaaccatcctttatatgccttttaaggaagatatgattgaaatcaaatgttttaaatgatccaacaattgtgatagattgacagtgtaa |
226 |
Q |
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| T |
39156659 |
atcacaaaccatcatttgtatgacttttaaggtatgtatgattgaagtcaaatatttttattgatccaatggttatgattgattgacagagtaa |
39156752 |
T |
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