View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10716_low_15 (Length: 252)

Name: NF10716_low_15
Description: NF10716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10716_low_15
NF10716_low_15
[»] chr4 (3 HSPs)
chr4 (104-239)||(34512640-34512774)
chr4 (104-239)||(28163333-28163469)
chr4 (104-239)||(44452634-44452771)
[»] chr7 (6 HSPs)
chr7 (104-239)||(8833262-8833397)
chr7 (104-239)||(8082356-8082491)
chr7 (104-239)||(38595051-38595187)
chr7 (104-239)||(37108228-37108364)
chr7 (104-239)||(1066230-1066367)
chr7 (104-183)||(40304201-40304279)
[»] chr8 (5 HSPs)
chr8 (113-239)||(44894032-44894157)
chr8 (104-239)||(32244226-32244363)
chr8 (104-226)||(3866233-3866357)
chr8 (108-173)||(6243801-6243866)
chr8 (104-141)||(44893965-44894003)
[»] chr5 (4 HSPs)
chr5 (104-244)||(37812808-37812947)
chr5 (104-244)||(19333008-19333151)
chr5 (104-239)||(40272788-40272924)
chr5 (108-239)||(43210453-43210587)
[»] chr1 (6 HSPs)
chr1 (108-239)||(52010412-52010542)
chr1 (104-239)||(11397584-11397724)
chr1 (104-239)||(25352505-25352639)
chr1 (104-239)||(52882139-52882274)
chr1 (104-239)||(49768236-49768373)
chr1 (109-235)||(27551126-27551254)
[»] chr3 (6 HSPs)
chr3 (104-239)||(31991635-31991771)
chr3 (104-239)||(44556246-44556383)
chr3 (104-238)||(33475798-33475934)
chr3 (104-244)||(52701708-52701855)
chr3 (104-239)||(8575508-8575643)
chr3 (130-239)||(41927784-41927897)
[»] chr2 (2 HSPs)
chr2 (104-239)||(32318552-32318689)
chr2 (132-239)||(3118524-3118627)
[»] chr6 (2 HSPs)
chr6 (104-214)||(289328-289439)
chr6 (106-239)||(3914031-3914165)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 104 - 239
Target Start/End: Original strand, 34512640 - 34512774
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgt 203  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| | ||||||||||||||| |||| |||||||||| |||    
T  34512640 attcctttttattcttccacatcaataaaatatttcaccctacaaatatttccggtcattccctaaatttgccgaaaaaa-accagatttgtgttgctgt 34512738  T
Q  204 ttctctttgttcctacttcgctctcttcaatcttct 239  Q
    ||||||||||||||||||||||||||||||||||||    
T  34512739 ttctctttgttcctacttcgctctcttcaatcttct 34512774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 104 - 239
Target Start/End: Original strand, 28163333 - 28163469
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccg--aaaaaagaccacatttgtgttgtt 201  Q
    ||||||||||||||||||| |||||||||||||||||||  || ||||||| |||||||||| |||||||||||  |||||| | || |||||||||  |    
T  28163333 attcctttttattcttccagatcaataaaatatttcacct-acaaatattttcggtcattccctgaatttgccggaaaaaaaaatcagatttgtgttact 28163431  T
Q  202 gtttctctttgttcctacttcgctctcttcaatcttct 239  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28163432 gtttctctttgttcctacttcgctctcttcaatcttct 28163469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 239
Target Start/End: Complemental strand, 44452771 - 44452634
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgc--cgaaaaaagaccacatttgtgttgtt 201  Q
    |||| |||||||||||||| ||| |||||||||||||||| || || |||| |||||||||| |||||||||   | ||||| |||| || ||||||  |    
T  44452771 attcttttttattcttccagatccataaaatatttcaccctacaaacattttcggtcattccctgaatttgctggggaaaaaaaccagatatgtgttact 44452672  T
Q  202 gtttctctttgttcctacttcgctctcttcaatcttct 239  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  44452671 gtttctctttgttactacttcgctctcttcaatcttct 44452634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 104 - 239
Target Start/End: Complemental strand, 8833397 - 8833262
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgt 203  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| ||| ||||| ||||||||||||||||| |||| |||||||||| | |    
T  8833397 attcctttttattcttccacatcaataaaatatttcaccctacaaatatttctggtaattccctgaatttgccgaaaaaaaaccagatttgtgttgctat 8833298  T
Q  204 ttctctttgttcctacttcgctctcttcaatcttct 239  Q
    |||||||||||||||||| |||||||||||||||||    
T  8833297 ttctctttgttcctactttgctctcttcaatcttct 8833262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 104 - 239
Target Start/End: Complemental strand, 8082491 - 8082356
Alignment:
Q  104 attcctttt-tattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttg 202  Q
    ||||||||| ||||||||||||||||||||||||||||||| || |||| || |||||||||| ||||||||||| ||||| |||| |||||||||| ||    
T  8082491 attccttttgtattcttccacatcaataaaatatttcaccctacaaatactttcggtcattccctgaatttgccggaaaaa-accagatttgtgttgctg 8082393  T
Q  203 tttctctttgttcctacttcgctctcttcaatcttct 239  Q
    |||||||||||||||||||| |||| |||||||||||    
T  8082392 tttctctttgttcctacttctctctattcaatcttct 8082356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 104 - 239
Target Start/End: Complemental strand, 38595187 - 38595051
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaaga-ccacatttgtgttgttg 202  Q
    |||||||||||||||||||  ||||||||||||||||||| || ||||||||| |||||||| ||||||||||||||||| | ||| | || ||||  ||    
T  38595187 attcctttttattcttccagttcaataaaatatttcaccctacaaatatttcctgtcattccctgaatttgccgaaaaaaaacccagacttatgttactg 38595088  T
Q  203 tttctctttgttcctacttcgctctcttcaatcttct 239  Q
    |||||||||||| ||||||||||||||||||||||||    
T  38595087 tttctctttgttactacttcgctctcttcaatcttct 38595051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 104 - 239
Target Start/End: Complemental strand, 37108364 - 37108228
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc-gaaaaaagaccacatttgtgttgttg 202  Q
    |||| |||||||||||||| ||| |||||||||||||||| || |||||||||||||||||| |||||||||| |  |||| |||| || ||||||  ||    
T  37108364 attcttttttattcttccagatccataaaatatttcaccctacaaatatttccggtcattccctgaatttgccggggaaaaaaccagatatgtgttactg 37108265  T
Q  203 tttctctttgttcctacttcgctctcttcaatcttct 239  Q
    |||||||||||| ||||||||||||||||||||||||    
T  37108264 tttctctttgttactacttcgctctcttcaatcttct 37108228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 104 - 239
Target Start/End: Complemental strand, 1066367 - 1066230
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc--gaaaaaagaccacatttgtgttgtt 201  Q
    |||| |||||||||||||| ||| |||||||||||||||| || |||||||||||||| ||| ||||||||||  | ||||| |||| || ||||||  |    
T  1066367 attcttttttattcttccagatccataaaatatttcaccctacaaatatttccggtcactccctgaatttgccagggaaaaaaaccagatatgtgttact 1066268  T
Q  202 gtttctctttgttcctacttcgctctcttcaatcttct 239  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  1066267 gtttctctttgttactacttcgctctcttcaatcttct 1066230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 40304279 - 40304201
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaa 183  Q
    ||||||||||||||||| | ||| |||||||||||||||| || |||||||| || |||||| ||||||||||| |||||    
T  40304279 attcctttttattcttcaagatccataaaatatttcaccctacaaatatttctgg-cattccctgaatttgccggaaaaa 40304201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 113 - 239
Target Start/End: Original strand, 44894032 - 44894157
Alignment:
Q  113 tattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgtttctctttg 212  Q
    ||||||||||||||||||||||||||||||| || ||||||| |||||||||| ||||||||||||||||| |||| |||||||||| ||||||||||||    
T  44894032 tattcttccacatcaataaaatatttcaccctacaaatattttcggtcattccctgaatttgccgaaaaaa-accagatttgtgttgctgtttctctttg 44894130  T
Q  213 ttcctacttcgctctcttcaatcttct 239  Q
    |||||||||||||||||||||||||||    
T  44894131 ttcctacttcgctctcttcaatcttct 44894157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 104 - 239
Target Start/End: Complemental strand, 32244363 - 32244226
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc--gaaaaaagaccacatttgtgttgtt 201  Q
    |||| |||||||||||||| ||| |||||||||||||||| || |||||||| ||||||||| ||||||||||  | |||||  ||| || ||||||  |    
T  32244363 attcttttttattcttccagatccataaaatatttcaccctacaaatatttctggtcattccctgaatttgccggggaaaaaacccagatatgtgttact 32244264  T
Q  202 gtttctctttgttcctacttcgctctcttcaatcttct 239  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  32244263 gtttctctttgttactacttcgctctcttcaatcttct 32244226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 104 - 226
Target Start/End: Complemental strand, 3866357 - 3866233
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc--gaaaaaagaccacatttgtgttgtt 201  Q
    |||| |||||||||||||| ||  |||||| ||||||||| || |||||||||||||||||| ||||||||||  | ||||| |||| || ||||||  |    
T  3866357 attcttttttattcttccagatacataaaacatttcaccctacaaatatttccggtcattccctgaatttgccagggaaaaaaaccagatatgtgttact 3866258  T
Q  202 gtttctctttgttcctacttcgctc 226  Q
    ||||||||||||| |||||||||||    
T  3866257 gtttctctttgttactacttcgctc 3866233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 6243801 - 6243866
Alignment:
Q  108 ctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaattt 173  Q
    ||||||||||||||| ||| |||||||||||||||| || |||||||| ||||||||| |||||||    
T  6243801 ctttttattcttccagatccataaaatatttcaccctacaaatatttctggtcattccctgaattt 6243866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 44893965 - 44894003
Alignment:
Q  104 attcctttt-tattcttccacatcaataaaatatttcac 141  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  44893965 attccttttgtattcttccacatcaataaaatatttcac 44894003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 104 - 244
Target Start/End: Complemental strand, 37812947 - 37812808
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgt 203  Q
    ||||||||||||||||||| |||||||||||||||||||| || ||||||||| |||||||| ||||||||||| ||||| |||| |||||||||  |||    
T  37812947 attcctttttattcttccagatcaataaaatatttcaccctacaaatatttcctgtcattccctgaatttgccggaaaaa-accagatttgtgttactgt 37812849  T
Q  204 ttctctttgttcctacttcgctctcttcaatcttctctgct 244  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  37812848 ttctctttgttactacttcgctctcttcaatcttctttgct 37812808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 244
Target Start/End: Complemental strand, 19333151 - 19333008
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccg---aaaaaagaccacatttgtgttgt 200  Q
    |||||||||||||||||||  ||||||||||||||||||| |  ||||||||| ||||||||||||||||||||   |||||| |||| |||||||||      
T  19333151 attcctttttattcttccagttcaataaaatatttcaccctaaaaatatttcctgtcattccttgaatttgccggaaaaaaaaaaccagatttgtgttac 19333052  T
Q  201 tgtttctctttgttcctacttcgctctcttcaatcttctctgct 244  Q
    |||||||||||||| ||||||| |||||||||||||||| ||||    
T  19333051 tgtttctctttgttactacttctctctcttcaatcttctttgct 19333008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 104 - 239
Target Start/End: Original strand, 40272788 - 40272924
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc-gaaaaaagaccacatttgtgttgttg 202  Q
    |||| |||||||||||||| ||| || ||||||||||||| || |||||||| |||||||||||||||||||| | |||||  ||| || |||||| |||    
T  40272788 attcttttttattcttccagatccatcaaatatttcaccctacaaatatttctggtcattccttgaatttgccgggaaaaaacccagatatgtgttattg 40272887  T
Q  203 tttctctttgttcctacttcgctctcttcaatcttct 239  Q
    |||||||||||| ||||||||||||||||||||||||    
T  40272888 tttctctttgttactacttcgctctcttcaatcttct 40272924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 239
Target Start/End: Complemental strand, 43210587 - 43210453
Alignment:
Q  108 ctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccg---aaaaaagaccacatttgtgttgttgtt 204  Q
    ||||||||||||||| ||  |||||||||||||||  || ||||||| |||||||||  ||||||| |||   || |||   |  ||||||||| |||||    
T  43210587 ctttttattcttccagattcataaaatatttcaccatacaaatattttcggtcattcactgaatttcccggataagaaaactctgatttgtgttattgtt 43210488  T
Q  205 tctctttgttcctacttcgctctcttcaatcttct 239  Q
    |||||||||| ||||||||||||||||||||||||    
T  43210487 tctctttgttactacttcgctctcttcaatcttct 43210453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 108 - 239
Target Start/End: Complemental strand, 52010542 - 52010412
Alignment:
Q  108 ctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgtttct 207  Q
    ||||||||||||||| |||||||||||||||||||| || |||||||||  ||||||| ||||||||||| ||||| |||| |||||||||  |||||||    
T  52010542 ctttttattcttccaaatcaataaaatatttcaccctacaaatatttccaatcattccctgaatttgccggaaaaa-accagatttgtgttactgtttct 52010444  T
Q  208 ctttgttcctacttcgctctcttcaatcttct 239  Q
    ||||||||||||||||||||||||||||||||    
T  52010443 ctttgttcctacttcgctctcttcaatcttct 52010412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 104 - 239
Target Start/End: Complemental strand, 11397724 - 11397584
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccg-----aaaaaagaccacatttgtgtt 198  Q
    |||||||||||||||||||  ||||||||||||||||||| || ||||||||| |||||||| |||||||||||     |||||| |||| |||||||||    
T  11397724 attcctttttattcttccaattcaataaaatatttcaccctacaaatatttcctgtcattccctgaatttgccggaaaaaaaaaaaaccagatttgtgtt 11397625  T
Q  199 gttgtttctctttgttcctacttcgctctcttcaatcttct 239  Q
      |||||||||||||| ||||||||||||||||||||||||    
T  11397624 actgtttctctttgttactacttcgctctcttcaatcttct 11397584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 239
Target Start/End: Complemental strand, 25352639 - 25352505
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgt 203  Q
    ||||||||||||||||| | |||||||||||||||||||| || |||||||||||||||||| | |||||| || ||||| | || |||||||||  |||    
T  25352639 attcctttttattcttctagatcaataaaatatttcaccctacaaatatttccggtcattccctaaatttgtcggaaaaa-atcagatttgtgttactgt 25352541  T
Q  204 ttctctttgttcctacttcgctctcttcaatcttct 239  Q
    |||||||| |||||||||  ||||||||||||||||    
T  25352540 ttctctttattcctactttactctcttcaatcttct 25352505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 104 - 239
Target Start/End: Complemental strand, 52882274 - 52882139
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgt 203  Q
    ||||||||||||||||| | ||  ||||||||||||||||  | ||||||| |||||||||| ||||||||| | ||||| | || |||||||||  |||    
T  52882274 attcctttttattcttcgagattcataaaatatttcaccctgcaaatattttcggtcattccctgaatttgcaggaaaaaaatcagatttgtgttactgt 52882175  T
Q  204 ttctctttgttcctacttcgctctcttcaatcttct 239  Q
    ||||||||||| |||||| |||||||||||||||||    
T  52882174 ttctctttgttactactttgctctcttcaatcttct 52882139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 239
Target Start/End: Complemental strand, 49768373 - 49768236
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgc--cgaaaaaagaccacatttgtgttgtt 201  Q
    |||| |||||||||||| | ||| ||||||||||||||||  | |||||||||||||||||| |||||||||   | ||||| |||| || ||||||  |    
T  49768373 attcttttttattcttctagatccataaaatatttcaccctgcaaatatttccggtcattccctgaatttgctggggaaaaaaaccaaatatgtgttact 49768274  T
Q  202 gtttctctttgttcctacttcgctctcttcaatcttct 239  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  49768273 gtttctctttgttactacttcgctctcttcaatcttct 49768236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 235
Target Start/End: Original strand, 27551126 - 27551254
Alignment:
Q  109 tttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc--gaaaaaagaccacatttgtgttgttgtttc 206  Q
    |||||||||||||| ||| |||||||||||||||| || ||||||||| |||||||| ||||||||||  | ||||| | || || |||||| |||||||    
T  27551126 tttttattcttccagatccataaaatatttcaccctacaaatatttccagtcattccctgaatttgcctgggaaaaaaagcagatatgtgttattgtttc 27551225  T
Q  207 tctttgttcctacttcgctctcttcaatc 235  Q
    |||||||| ||||||| ||||||||||||    
T  27551226 tctttgttactacttcactctcttcaatc 27551254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 104 - 239
Target Start/End: Complemental strand, 31991771 - 31991635
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccga-aaaaagaccacatttgtgttgttg 202  Q
    ||||||| ||||||||||| ||| |||||||||||||||| || |||||||||||||||| | |||||||||||| ||||| | || || |||||| |||    
T  31991771 attccttattattcttccagatccataaaatatttcaccctacaaatatttccggtcatttcctgaatttgccgagaaaaaaaacaaatatgtgttattg 31991672  T
Q  203 tttctctttgttcctacttcgctctcttcaatcttct 239  Q
    |||||||||||| ||||||||||||||||||||||||    
T  31991671 tttctctttgttactacttcgctctcttcaatcttct 31991635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 104 - 239
Target Start/End: Original strand, 44556246 - 44556383
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc--gaaaaaagaccacatttgtgttgtt 201  Q
    |||| |||||||||||| | ||| |||||||||||||||| || |||||||||||||||||| ||||||||||  | |||||  ||| || |||||| ||    
T  44556246 attcttttttattcttctagatccataaaatatttcaccctacaaatatttccggtcattccctgaatttgccggggaaaaaacccagatatgtgttatt 44556345  T
Q  202 gtttctctttgttcctacttcgctctcttcaatcttct 239  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  44556346 gtttctctttgttactacttcgctctcttcaatcttct 44556383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 33475798 - 33475934
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc--gaaaaaagaccacatttgtgttgtt 201  Q
    |||| |||||||||||||| ||| |||||||||||||||| || |||||||| ||||||||| ||||||||||  | ||||   ||| || ||||||  |    
T  33475798 attcttttttattcttccagatccataaaatatttcaccctacaaatatttctggtcattccctgaatttgccggggaaaacacccagatatgtgttact 33475897  T
Q  202 gtttctctttgttcctacttcgctctcttcaatcttc 238  Q
    ||||||||||||| |||||||||||||||||||||||    
T  33475898 gtttctctttgttactacttcgctctcttcaatcttc 33475934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 244
Target Start/End: Complemental strand, 52701855 - 52701708
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccg-----aaaaaagaccacatttgtgtt 198  Q
    |||||||||||||||||||  ||||||||||||||||||| || ||||||||| |||||||| | |||||||||     |||||| |||| |||| ||||    
T  52701855 attcctttttattcttccagttcaataaaatatttcaccctacaaatatttcctgtcattccctaaatttgccggaaaaaaaaaaaaccagatttatgtt 52701756  T
Q  199 gttgtttctctttgttcctacttcgctctc--ttcaatcttctctgct 244  Q
      |||||||||||||| |||||||||||||  ||||||||||| ||||    
T  52701755 actgtttctctttgttactacttcgctctcttttcaatcttctttgct 52701708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 239
Target Start/End: Original strand, 8575508 - 8575643
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaa-aaaagaccacatttgtgttgttg 202  Q
    ||||||||||||||||| | ||| |||||||||||| ||| || |||||||||||||||||  ||||||| | |   |||| |||| || |||||| |||    
T  8575508 attcctttttattcttctagatccataaaatatttc-ccctacaaatatttccggtcattcactgaattttctgggcaaaaaaccaaatatgtgttattg 8575606  T
Q  203 tttctctttgttcctacttcgctctcttcaatcttct 239  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  8575607 tttctctttgttactatttcgctctcttcaatcttct 8575643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 239
Target Start/End: Complemental strand, 41927897 - 41927784
Alignment:
Q  130 aaaatatttcaccccaccaatatttccggtcattccttgaatttgccg----aaaaaagaccacatttgtgttgttgtttctctttgttcctacttcgct 225  Q
    |||||||||||||| || ||||||||| | |||||| | |||||| ||    |||||| | || || ||||||  |||||||||||||| ||||||||||    
T  41927897 aaaatatttcaccctacaaatatttccagccattccctaaatttgtcgggggaaaaaaaagcagatatgtgttactgtttctctttgttactacttcgct 41927798  T
Q  226 ctcttcaatcttct 239  Q
    ||||||||||||||    
T  41927797 ctcttcaatcttct 41927784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 239
Target Start/End: Original strand, 32318552 - 32318689
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgcc--gaaaaaagaccacatttgtgttgtt 201  Q
    |||| |||||||||||||| ||| |||||||||||||||| || ||||||| |||||||||| ||||||||||  | ||||| |||| || ||||||  |    
T  32318552 attcttttttattcttccagatccataaaatatttcaccctacaaatattttcggtcattccctgaatttgccagggaaaaaaaccagatatgtgttaat 32318651  T
Q  202 gtttctctttgttcctacttcgctctcttcaatcttct 239  Q
    ||||||||||||| |||||| ||||| |||||||||||    
T  32318652 gtttctctttgttactactttgctcttttcaatcttct 32318689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 3118627 - 3118524
Alignment:
Q  132 aatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaagaccacatttgtgttgttgtttctctttgttcctacttcgctctcttc 231  Q
    ||||||||| || || |||||||||||||||||||||||||||||| ||||| |||| || |||||     |||||||||||| |||||||||||||||     
T  3118627 aatatttcatcctacaaatatttccggtcattccttgaatttgccggaaaaaaaccagatatgtgtc----tttctctttgttactacttcgctctcttt 3118532  T
Q  232 aatcttct 239  Q
    ||||||||    
T  3118531 aatcttct 3118524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 214
Target Start/End: Original strand, 289328 - 289439
Alignment:
Q  104 attcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttg-ccgaaaaaagaccacatttgtgttgttg 202  Q
    |||| ||||||||||| || ||| |||||||||||||||| || |||||||| ||||||||| |||||||| | | ||||| |||| || ||||||  |     
T  289328 attcttttttattctttcagatccataaaatatttcaccctacaaatatttctggtcattccctgaatttgtcaggaaaaaaaccaaatatgtgttactc 289427  T
Q  203 tttctctttgtt 214  Q
    ||||||||||||    
T  289428 tttctctttgtt 289439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 3914031 - 3914165
Alignment:
Q  106 tcctttttattcttccacatcaataaaatatttcaccccaccaatatttccggtcattccttgaatttgccgaaaaaa-gaccacatttgtgttgttgtt 204  Q
    ||||||||||||||| | ||| ||| |||||||||||| || |||||||  ||||||||| | ||||||  |||||||   ||  || ||||||  ||||    
T  3914031 tcctttttattcttcaagatccatagaatatttcaccctacaaatatttatggtcattccctaaatttgttgaaaaaacccccggatctgtgttactgtt 3914130  T
Q  205 tctctttgttcctacttcgctctcttcaatcttct 239  Q
    ||||| | || ||||||||||||||||||| ||||    
T  3914131 tctctctattactacttcgctctcttcaatattct 3914165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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