View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10716_low_2 (Length: 390)

Name: NF10716_low_2
Description: NF10716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10716_low_2
NF10716_low_2
[»] chr2 (1 HSPs)
chr2 (13-382)||(33637688-33638054)
[»] chr4 (1 HSPs)
chr4 (13-372)||(13784397-13784753)
[»] chr8 (5 HSPs)
chr8 (114-379)||(29124533-29124798)
chr8 (63-346)||(31669440-31669720)
chr8 (13-99)||(40794209-40794295)
chr8 (13-99)||(29124849-29124938)
chr8 (181-266)||(40794307-40794392)
[»] scaffold0128 (2 HSPs)
scaffold0128 (13-372)||(34060-34416)
scaffold0128 (201-372)||(29236-29404)
[»] chr3 (1 HSPs)
chr3 (13-362)||(3837593-3837942)
[»] scaffold0267 (1 HSPs)
scaffold0267 (13-362)||(13074-13423)
[»] chr7 (1 HSPs)
chr7 (16-364)||(20476010-20476358)


Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 13 - 382
Target Start/End: Original strand, 33637688 - 33638054
Alignment:
Q  13 actccaaactctctcatttcccacaaaacaaaataggttctcatgtggacataataaaggcacaaacgatccctcaaaacaacaagagttggttcatctt 112  Q
    |||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33637688 actccaaactctctcatttctcacaaaacaagatgggttctcatgtggacataataaaggcacagacgatccctcaaaacaacaagagttggttcatctt 33637787  T
Q  113 tgggcacttcaacaaaaccatcaggtaacatcatatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacattttt 212  Q
    |||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33637788 tgggtac---aacaaaaccatcaggtaacatcatatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacattttt 33637884  T
Q  213 ccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  33637885 ccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacgaattgtccaacgagagtgcctccaagtagaattggaaaa 33637984  T
Q  313 tcagggcaagcaatagtctttctccaacaactatctcccatgcaatgaaccctcccctcccatttctgtg 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33637985 tcagggcaagcaatagtctttctccaacaactatctcccatgcaatgaaccctcccctcccatttctgtg 33638054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 13 - 372
Target Start/End: Original strand, 13784397 - 13784753
Alignment:
Q  13 actccaaactctctcatttcccacaaaacaaaataggttctcatgtggacataataaaggcacaaacgatccctcaaaacaacaagagttggttcatctt 112  Q
    |||||| |||||||||||||||||||||||||||  |||||||| ||  ||||||||||||| |  ||| ||||||||||| |||||| |||||||||||    
T  13784397 actccatactctctcatttcccacaaaacaaaatgtgttctcatttgatcataataaaggcagaggcgacccctcaaaacagcaagagctggttcatctt 13784496  T
Q  113 tgggcacttcaacaaaaccatcaggtaacatcatatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacattttt 212  Q
     |||||| ||| ||||||||||||| | ||  |||||||||||   |||| |||||| |||||  || |||| ||||||||| | ||| |||| |||||     
T  13784497 ggggcacctcaccaaaaccatcaggcagcaaaatatacttacatttctccttccgcagatcaagtgaaaaaaccactaattgttggatagtaatattttc 13784596  T
Q  213 ccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaa 312  Q
    |||||||||   || ||  |||| ||||||| |||||||||| |||||||||||||||||| ||||||||  |  |||   ||  |||||||||||||||    
T  13784597 ccatttataatcatcactgtttaagttgtgaagtgctaaccagttaacactaccattcacgaatggtccattggaagt---tcgtagtagaattggaaaa 13784693  T
Q  313 tcagggcaagcaatagtctttctccaacaactatctcccatgcaatgaaccctcccctcc 372  Q
      ||||||| | ||||||||||||||||||||||| ||||| |||||||| |||||||||    
T  13784694 gtagggcaatcgatagtctttctccaacaactatcacccatacaatgaactctcccctcc 13784753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 114 - 379
Target Start/End: Complemental strand, 29124798 - 29124533
Alignment:
Q  114 gggcacttcaacaaaaccatcaggtaacatcatatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttc 213  Q
    ||||| ||||| |||||||| ||  |||| |||||||||||| ||||||| |||||||||||  |||||||| | ||| || | ||   |||||||||||    
T  29124798 gggcatttcaataaaaccattagacaacaacatatacttacatgcctccagccgcatatcaagtgataaaattattaactgatcgacaataacatttttc 29124699  T
Q  214 catttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaat 313  Q
     ||| || |||||||||||||| | | |||||||||||| | |||| ||||||||||||| |||||||||| |||||||||    |||||||||||||||    
T  29124698 aattcattcatatgacaatttaagctatgacgtgctaactagttaatactaccattcacgaatggtccaacaagagtgccttttggtagaattggaaaat 29124599  T
Q  314 cagggcaagcaatagtctttctccaacaactatctcccatgcaatgaaccctcccctcccatttct 379  Q
    |||||||||||| |||||||||||||||||| || |||||||||||||| ||||| ||||||||||    
T  29124598 cagggcaagcaagagtctttctccaacaactttcacccatgcaatgaactctcccttcccatttct 29124533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 63 - 346
Target Start/End: Complemental strand, 31669720 - 31669440
Alignment:
Q  63 ataataaaggcacaaacgatccctcaaaacaacaagagttggttcatctttgggcacttcaacaaaaccatcaggtaacatcatatacttacacgcctcc 162  Q
    ||||||||||||||  |||  ||| |||||| ||||| ||||  ||| || ||||| |||||||||||||| |||   || |||||||||| | | || |    
T  31669720 ataataaaggcacatgcgactccttaaaacatcaagatttggcccattttggggcatttcaacaaaaccattagg---cagcatatacttatatgtcttc 31669624  T
Q  163 atccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacac 262  Q
    |||  |||||||| ||||||||| ||||| |||| || | |||||||||   ||| || ||||||  |||||| | | ||| |||||||| | |||| ||    
T  31669623 atcttcatatcaagcgataaaattactaagtggtcgacgataacattttgaaattcattcatatggaaatttaagctatgatgtgctaacaagttaatac 31669524  T
Q  263 taccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaactat 346  Q
    ||||||||||| |||||||||| | || | ||   |||| ||||||||||||||||||||||| ||||||||||||||| ||||    
T  31669523 taccattcacgaatggtccaacaaaagcgtcttttagtaaaattggaaaatcagggcaagcaaaagtctttctccaacatctat 31669440  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 40794209 - 40794295
Alignment:
Q  13 actccaaactctctcatttcccacaaaacaaaataggttctcatgtggacataataaaggcacaaacgatccctcaaaacaacaaga 99  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||   ||||||||||||| |  ||| ||||||||||| |||||    
T  40794209 actccaaactctctcatttcccacaaaacaaaatgtgttctcatgtaatcataataaaggcaaaggcgacccctcaaaacagcaaga 40794295  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 29124938 - 29124849
Alignment:
Q  13 actccaaactctctcatttcccacaaaacaaaataggttctcatgtggac---ataataaaggcacaaacgatccctcaaaacaacaaga 99  Q
    |||||||||||||||||| ||||||||   |||| ||||||||| ||| |   ||||||||||||||| ||| ||||||||||| |||||    
T  29124938 actccaaactctctcattccccacaaagtgaaatgggttctcatctggtcataataataaaggcacaatcgacccctcaaaacagcaaga 29124849  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 40794307 - 40794392
Alignment:
Q  181 aaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactacc 266  Q
    |||| ||||||||| | |||||||||||||| |||||||||   || ||  |||| ||||||| |||||||| | |||||||||||    
T  40794307 aaaaccactaattgttggatggtaacattttcccatttataatcattactgtttaagttgtgaagtgctaactagttaacactacc 40794392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 13 - 372
Target Start/End: Original strand, 34060 - 34416
Alignment:
Q  13 actccaaactctctcatttcccacaaaacaaaataggttctcatgtggacataataaaggcacaaacgatccctcaaaacaacaagagttggttcatctt 112  Q
    |||||| |||||||||||||||||||||||||||  |||||||| ||  ||||||||||||| |  ||| ||||||||||| |||||| |||||||||||    
T  34060 actccatactctctcatttcccacaaaacaaaatgtgttctcatatgatcataataaaggcagaggcgacccctcaaaacagcaagagctggttcatctt 34159  T
Q  113 tgggcacttcaacaaaaccatcaggtaacatcatatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacattttt 212  Q
     |||||  ||| ||||||||   || ||||  ||||||||||| | |||| |||||| |||||  || |||| ||||||||| | ||||||||||||||     
T  34160 cgggcagctcaccaaaaccaatgggcaacaaaatatacttacatgtctccttccgcagatcaagtgaaaaaaccactaattgttggatggtaacattttc 34259  T
Q  213 ccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaa 312  Q
    |||||||||   || ||  |||| ||||||| |||||||||| |||||||| ||||||||| ||||||||  |  | |   ||  |||||||||||||||    
T  34260 ccatttataatcatcactgtttaagttgtgaagtgctaaccagttaacactgccattcacgaatggtccattggaaat---tcgtagtagaattggaaaa 34356  T
Q  313 tcagggcaagcaatagtctttctccaacaactatctcccatgcaatgaaccctcccctcc 372  Q
      ||||||| | | ||||||||||||||||||||| ||||| || ||||| |||||||||    
T  34357 gtagggcaatcgagagtctttctccaacaactatcacccatacagtgaactctcccctcc 34416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 201 - 372
Target Start/End: Original strand, 29236 - 29404
Alignment:
Q  201 ggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagt 300  Q
    ||||||||||| |||||||||  ||| ||| |||| ||| ||| |||||||||| |||||||||||||||||| ||||||||  |  |||   ||  |||    
T  29236 ggtaacattttcccatttataattatcacagtttacgttttgaagtgctaaccagttaacactaccattcacgaatggtccattgcaagt---tcgtagt 29332  T
Q  301 agaattggaaaatcagggcaagcaatagtctttctccaacaactatctcccatgcaatgaaccctcccctcc 372  Q
    ||||||||||||  ||||||| |   ||||||||||||||||||||| | ||| |||||||| |||||||||    
T  29333 agaattggaaaagtagggcaatcgggagtctttctccaacaactatcactcatacaatgaactctcccctcc 29404  T

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Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 3837942 - 3837593
Alignment:
Q  13 actccaaactctctcatttcccacaaaacaaaataggttctcatgtggacataataaaggcacaaacgatccctcaaaacaacaagagttggttcatctt 112  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||  ||||||||  ||||| | | | ||||||||| ||||  ||  |  |||||    
T  3837942 actccaaactctttcatttcccacaaaacaaaatgggttctcatgtggttataataaaaacacaagcaacctctcaaaacagcaagttttaatagatctt 3837843  T
Q  113 tgggcacttcaacaaaaccatcaggtaacatcatatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacattttt 212  Q
     || |||| |      | |||| || ||||  ||||||||||| |||||| | |||| ||||| ||| ||||||| ||| |||||||||||||||||||     
T  3837842 gggacactacggttgtagcatctggcaacaaaatatacttacatgcctcctttcgcaaatcaagcgaaaaaatcaataactggttgatggtaacattttc 3837743  T
Q  213 ccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaa 312  Q
    || || ||||| ||||||||||| ||| |||   | |||||| |||||||||||||||||| |||||||||||| ||| | |   |||| ||||||||||    
T  3837742 cctttcatacaaatgacaatttaagttatgatacgttaaccagttaacactaccattcacgaatggtccaacgatagtcctttgtagtaaaattggaaaa 3837643  T
Q  313 tcagggcaagcaatagtctttctccaacaactatctcccatgcaatgaac 362  Q
    ||| ||||||||| ||| ||||||||| ||||||| ||||||||||||||    
T  3837642 tcatggcaagcaagagtatttctccaagaactatcgcccatgcaatgaac 3837593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 13423 - 13074
Alignment:
Q  13 actccaaactctctcatttcccacaaaacaaaataggttctcatgtggacataataaaggcacaaacgatccctcaaaacaacaagagttggttcatctt 112  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||  ||||||||  ||||| | | ||||||||||| ||||  || ||  |||||    
T  13423 actccaaactctttcatttcccacaaaacaaaatgggttctcatgtggttataataaaaacacaagcaacccctcaaaacagcaagttttagtagatctt 13324  T
Q  113 tgggcacttcaacaaaaccatcaggtaacatcatatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacattttt 212  Q
     || |||| |      || ||| || ||||  ||||||||||| | |||| | |||| ||||| ||| ||||||| ||| ||||| |||||||||||||     
T  13323 gggacactacggttgtactatctggcaacaaaatatacttacatgtctcctttcgcaaatcaagcgaaaaaatcaataactggttaatggtaacattttc 13224  T
Q  213 ccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaa 312  Q
    || || ||||| ||||||||||| ||| |||   | |||||| ||||||||||||||||   |||||||||||| ||| | |   |||| ||||||||||    
T  13223 cctttcatacaaatgacaatttaagttatgatacgttaaccagttaacactaccattcagaaatggtccaacgatagtcctttgtagtaaaattggaaaa 13124  T
Q  313 tcagggcaagcaatagtctttctccaacaactatctcccatgcaatgaac 362  Q
    ||| ||||||||| ||| ||||||||| ||||||| ||||||||||||||    
T  13123 tcatggcaagcaagagtatttctccaagaactatcgcccatgcaatgaac 13074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 364
Target Start/End: Original strand, 20476010 - 20476358
Alignment:
Q  16 ccaaactctctcatttcccacaaaacaaaataggttctcatgtggacataataaaggcacaaacgatccctcaaaacaacaagagttggttcatctttgg 115  Q
    ||||||||||||||||||||||||||||||| ||||||||| |   ||||||||| ||| |  |   |||||||||||  |||  |||||||||||| ||    
T  20476010 ccaaactctctcatttcccacaaaacaaaatgggttctcatataatcataataaaagcataggcagcccctcaaaacagtaagccttggttcatcttcgg 20476109  T
Q  116 gcacttcaacaaaaccatcaggtaacatcatatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttcca 215  Q
    | | ||||  |||||||||||| |||| | ||||||| || | |||| |  | | |||||  || |||||  |||| || |||||||||||||||| |||    
T  20476110 gaagttcactaaaaccatcaggcaacaacgtatacttgcatgtctccttttgtagatcaagtgaaaaaatagctaactgattgatggtaacattttccca 20476209  T
Q  216 tttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatca 315  Q
    || |||   |||| | |||  ||||||   ||||||||| |||||| ||||| ||||  ||| |||||   || ||    | |||||||||||||||       
T  20476210 ttcatattcatgaaattttgagttgtgcaatgctaaccagttaacattaccactcacaaatgatccaatctgattgtaatccagtagaattggaaaagtg 20476309  T
Q  316 gggcaagcaatagtctttctccaacaactatctcccatgcaatgaaccc 364  Q
    |||||| | ||| |||| ||||||||| |||| ||||||||||||||||    
T  20476310 gggcaaactataatcttcctccaacaattatcacccatgcaatgaaccc 20476358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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