View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10716_low_20 (Length: 227)
Name: NF10716_low_20
Description: NF10716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10716_low_20 |
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| [»] scaffold0640 (1 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 4 - 208
Target Start/End: Complemental strand, 41199992 - 41199789
Alignment:
| Q |
4 |
gtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaaga |
103 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41199992 |
gtgtgatatgcatttattacgcaaaacatatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaaga |
41199893 |
T |
|
| Q |
104 |
ctcctaaaacaaagttcatttctagcttccacttttcttaaatagtctctcagccattttctcaccgattgctgattactacagtagcaagagagaagag |
203 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41199892 |
ctcctaaaac-aagttcatttctagcttccacttttcttaaatagtctctcagccattttctcaccgattactgattactacagtagcaagagagaagag |
41199794 |
T |
|
| Q |
204 |
cttat |
208 |
Q |
| |
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||||| |
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|
| T |
41199793 |
cttat |
41199789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 4 - 208
Target Start/End: Complemental strand, 1041680 - 1041477
Alignment:
| Q |
4 |
gtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaaga |
103 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1041680 |
gtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaaga |
1041581 |
T |
|
| Q |
104 |
ctcctaaaacaaagttcatttctagcttccacttttcttaaatagtctctcagccattttctcaccgattgctgattactacagtagcaagagagaagag |
203 |
Q |
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|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1041580 |
ctgctaaaac-aagttcatttctagcttccacttttcttaaatagtctctcagccactttctcaccgattactgattactacagtagcaagagagaagag |
1041482 |
T |
|
| Q |
204 |
cttat |
208 |
Q |
| |
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||||| |
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|
| T |
1041481 |
cttat |
1041477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 41192745 - 41192634
Alignment:
| Q |
4 |
gtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaaga |
103 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41192745 |
gtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaaga |
41192646 |
T |
|
| Q |
104 |
ctcctaaaacaa |
115 |
Q |
| |
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|| ||||||||| |
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| T |
41192645 |
ctgctaaaacaa |
41192634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 4 - 208
Target Start/End: Complemental strand, 33323271 - 33323068
Alignment:
| Q |
4 |
gtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaaga |
103 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33323271 |
gtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaaga |
33323172 |
T |
|
| Q |
104 |
ctcctaaaacaaagttcatttctagcttccacttttcttaaatagtctctcagccattttctcaccgattgctgattactacagtagcaagagagaagag |
203 |
Q |
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|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33323171 |
ctgctaaaac-aagttcatttctagcttccacttttcttaaatagtctctcagccactttctcaccgattactgattactacagtagcaagagagaagag |
33323073 |
T |
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| Q |
204 |
cttat |
208 |
Q |
| |
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||||| |
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|
| T |
33323072 |
cttat |
33323068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 16700400 - 16700496
Alignment:
| Q |
10 |
tatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaacagattagtagtatcctcctgttccaacttacacattgtgaagactcc |
107 |
Q |
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||||||||||||| ||||||| |||||||| ||||||||| |||| |||||| || ||| | ||||| ||||| ||||| ||||||||| |||||||| |
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| T |
16700400 |
tatgcatttattatgcaaaactgatgagaagtctaactgatattcgaaaacatatcagtcgcatcctgctgtttcaactgacacattgt-aagactcc |
16700496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 3504 - 3549
Alignment:
| Q |
4 |
gtgtgatatgcatttattacgcaaaacagatgagaaatctaactga |
49 |
Q |
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||||| ||||| || |||||||||||| |||||||||||||||||| |
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| T |
3504 |
gtgtgttatgctttaattacgcaaaactgatgagaaatctaactga |
3549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 24068 - 24113
Alignment:
| Q |
4 |
gtgtgatatgcatttattacgcaaaacagatgagaaatctaactga |
49 |
Q |
| |
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||||| ||||| || |||||||||||| |||||||||||||||||| |
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| T |
24068 |
gtgtgttatgctttaattacgcaaaactgatgagaaatctaactga |
24113 |
T |
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