View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10716_low_3 (Length: 383)
Name: NF10716_low_3
Description: NF10716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10716_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 5254967 - 5255332
Alignment:
| Q |
1 |
gaattaaatgatgtgacttaaattatttccctgttaaatttttgcatttatgtgtgtgcgcccaaataaatttgatttggggttgtgtccaaatcaaaat |
100 |
Q |
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| T |
5254967 |
gaattaaatgatgtgacttaaattatttctcttttaaatttttacatttatgtgtgtgcattcaaataaatttgatttggggttgtgtccaaaccaaaat |
5255066 |
T |
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| Q |
101 |
ttctcgtttctcttatgagtttcctctctttcatccataataaatttgtaacgtgcatctctataacactcattaaatctctcgttcccttttttgaacc |
200 |
Q |
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| T |
5255067 |
ttctcgtttctcttatgagtttcctcactttcatctataataaatttgtaacgtgcatctctataacactcattaaatctttcgttcccttttttgaacc |
5255166 |
T |
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| Q |
201 |
aaacagacctttactattttttcgacttttgcatgattatttgatgtatccaaatttttagaactgaatttatttatttattttgttgaagtttatgtgt |
300 |
Q |
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| T |
5255167 |
aaacagacctttactattttttcgacttttgcatgattatttgatgtatccaaatttttagaactgaatttatttattt-ttttgttgaagtttatgtgt |
5255265 |
T |
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| Q |
301 |
ttaatagtctcccattttgacctatgaaacagcatggaagacattttggaacgatatgagagacaaa |
367 |
Q |
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| T |
5255266 |
ttaatagtctcccattttgacctatgaaacagtatggaagacattttggagcgatatgagagacaaa |
5255332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 31012642 - 31012554
Alignment:
| Q |
3 |
attaaatgatgtgacttaaattatttccctgttaaatttttgcatttatgtgtgtgcgcccaaataaatttgatttggggttgtgtccaa |
92 |
Q |
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| T |
31012642 |
attaaatgatgtgact-aaattatttctcttttaagttttaccatatatgtgtgtttgcccaaatacttttgatttggggttgtgtccaa |
31012554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 10376234 - 10376324
Alignment:
| Q |
1 |
gaattaaatgatgtgacttaaattatttccctgttaaatttt-tgcatttatgtgt--gtgcgcccaaataaatttgatttggggttgtgt |
88 |
Q |
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| T |
10376234 |
gaattaaatgatgtgacttaaatcatttctcttttaatttttatacatttgtgtgtgcgtgcgtccaaataaatttgatttgtggttgtgt |
10376324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 14502779 - 14502692
Alignment:
| Q |
4 |
ttaaatgatgtgacttaaattatttccctgttaaatttttgcatttatgtgtgtgcgcccaaataaatttgatttggggttgtgtccaa |
92 |
Q |
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| T |
14502779 |
ttaagtgatgtgact-aaattatttctcttttaaattttatcatttacgtgtgtgcgcctaaatacttttgatttgaggttgtgcccaa |
14502692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 31133900 - 31133982
Alignment:
| Q |
1 |
gaattaaatgatgtgacttaaattatttccctgttaaatttttgcatttatgtgtgtgcgcccaaataaatttgatttggggttgtg |
87 |
Q |
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| T |
31133900 |
gaattaaatgatttgacttaaatcatatctctttttattttttacatttatgtgtgt----ccaaataaatttgatttgaggttgtg |
31133982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 25009141 - 25009093
Alignment:
| Q |
39 |
tttttgcatttatgtgtgtgcgcccaaataaatttgatttggggttgtg |
87 |
Q |
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| T |
25009141 |
tttttacatttaagtgtgtgtgcccaaataaatttgatttgggtttgtg |
25009093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 32943545 - 32943499
Alignment:
| Q |
46 |
atttatgtgtgtgcgcccaaataaatttgatttggggttgtgtccaa |
92 |
Q |
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| T |
32943545 |
atttatgtgtgtgcgtccaaatacttttgatttgtggttgtgtccaa |
32943499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 36801931 - 36801895
Alignment:
| Q |
51 |
tgtgtgtgcgcccaaataaatttgatttggggttgtg |
87 |
Q |
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| T |
36801931 |
tgtgtgtgcgcccaaataaatttgatttgggtttgtg |
36801895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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