View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10717_low_1 (Length: 386)
Name: NF10717_low_1
Description: NF10717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10717_low_1 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 14 - 371
Target Start/End: Original strand, 303609 - 303980
Alignment:
| Q |
14 |
caaagggaacaagacttttccttaaccattaaatctgaagaggactctcaagatagttgcaagactaattccacccctggtgctagaggatctcacaaaa |
113 |
Q |
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| T |
303609 |
caaagggaacaaaacttttccttaaccattaaatctgaagaggactctcaagatagttgcaagactaattccacccctggtgctagaggatctcacaaaa |
303708 |
T |
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| Q |
114 |
gaaggtactaatcattaaaaacaatcatgttaattgtttgctagctaggaatatgaacannnnnnn--------------gttaatttgcagaaaaacta |
199 |
Q |
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| T |
303709 |
gaaggtactaatcattaaaaacaatcatgttaattgtttgctagctaggaatatgaacatttttttatttattgatcatggttaatttgcagaaaaacta |
303808 |
T |
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| Q |
200 |
gagaaacgtgtgaggaagtgtcagaaagaccaacagatgatgggcatgaatggagaaagtatggtcaaaaaacaatccttaattccaaatactcaaggtg |
299 |
Q |
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| T |
303809 |
gagaaacgtgtgaggaagtgtcagaaagaccaacagatgatgggcatgaatggagaaagtatggtcaaaaaacaatccttaattccaaatactcaaggtg |
303908 |
T |
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| Q |
300 |
tgttgtattgtgtatatcgatatctgtttcctaataacttttcacagtttgttcagagcttaatatatatat |
371 |
Q |
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| T |
303909 |
tgttgtattgtgtatatcgatatctgtttcctaataacttttcacagtttgttcagagcttaatatatatat |
303980 |
T |
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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 263
Target Start/End: Original strand, 478702 - 478778
Alignment:
| Q |
187 |
tgcagaaaaactagagaaacgtgtgaggaagtgtcagaaagaccaacagatgatgggcatgaatggagaaagtatgg |
263 |
Q |
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| T |
478702 |
tgcagaagaactacacaaacatgggagaaggtgacagaaactccaacagatgatgggcatcaatggagacagtatgg |
478778 |
T |
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