View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10717_low_10 (Length: 218)
Name: NF10717_low_10
Description: NF10717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10717_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 30719497 - 30719307
Alignment:
| Q |
17 |
aggggcgtagatgcagccgaaggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaacttt |
116 |
Q |
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| T |
30719497 |
aggggagtcgatgcagccgaaggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaactat |
30719398 |
T |
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| Q |
117 |
gtaaattatgctaaattaatgtggttgttcttgcatttagcagctacatagaatgtgatttgcgatttatgtatatacttgtgtatctatt |
207 |
Q |
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| T |
30719397 |
gtaaattatgctaaattaatgtggttgttcttccatttagcagctacatagaatgtgatttgcgatttatgtatatacttgtgtatctatt |
30719307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 30881862 - 30881965
Alignment:
| Q |
17 |
aggggcgtagatgcagccgaaggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaacttt |
116 |
Q |
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| T |
30881862 |
aggggagtcgatgcagccgaaggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaacttt |
30881961 |
T |
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| Q |
117 |
gtaa |
120 |
Q |
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|||| |
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| T |
30881962 |
gtaa |
30881965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 44730933 - 44730830
Alignment:
| Q |
17 |
aggggcgtagatgcagccgaaggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaacttt |
116 |
Q |
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| T |
44730933 |
aggggagtggatgccgctgaaggactctgtggcattgcaatgcaagcatcttaccctactgcttaattctcaaacttaatacttaagttacctaaacttt |
44730834 |
T |
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| Q |
117 |
gtaa |
120 |
Q |
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|||| |
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| T |
44730833 |
gtaa |
44730830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 16867311 - 16867217
Alignment:
| Q |
26 |
gatgcagccgaaggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaactttgtaa |
120 |
Q |
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| T |
16867311 |
gatgctgctgaaggactttgtggcattgcaatgcaagcatcataccctactgcttaaatgtcaaaattaatacttatgttatctaaactttgtaa |
16867217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 30892949 - 30893062
Alignment:
| Q |
21 |
gcgtagatgcagccgaaggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaactttgtaa |
120 |
Q |
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| T |
30892949 |
gcgtagatgctgctcaaggactttgtggcattgcaatgatggcatcttatcccactgcttgaaagacaaacttgatacttatattccccaaactatgtaa |
30893048 |
T |
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| Q |
121 |
attatgctaaatta |
134 |
Q |
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| T |
30893049 |
attatgctaaatta |
30893062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 8899495 - 8899579
Alignment:
| Q |
35 |
gaaggactttgtggcattgcaatggaagcatcttaccctactgcttaacttccaaacttaatgcgtatgttacctaaactttgta |
119 |
Q |
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| T |
8899495 |
gaagggctctgtggcattgcaatgcaggcatcttaccctactgcttaaatgccaaacttaatacttatgttacctaaactttgta |
8899579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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