View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10717_low_2 (Length: 357)
Name: NF10717_low_2
Description: NF10717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10717_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 46112629 - 46112959
Alignment:
| Q |
17 |
gttacaataatgaaattccgttaaaaatattatctaatattttcagaaattttattgcattttcaaagatatagcaaacactttcatgaaaacgtgattc |
116 |
Q |
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| T |
46112629 |
gttacaataatgaaattccgttaaaaatattatctaatattttcagaaattttattgcattttcaaagatatagcaaacactttcatgaaaacgtgattc |
46112728 |
T |
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| Q |
117 |
ctaaaacctgcattaaaaaagtatgcatatcaaacaccactcatttttatttatacgaaaaatttagagcaagtggactatgcctcaatcttatatagga |
216 |
Q |
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| T |
46112729 |
ctaaaacctgcattaaaaaagtatgcatatcaaacaccactcatttttatttatacgaaaaatttagagcaagtggactatacctcaatcttatatagga |
46112828 |
T |
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| Q |
217 |
aagaccttaaaa-ttttgacaacattgaccaagagatatacatttatcttaatacaaaaacattagcaagaccacaatacatgatccaatgcctctttct |
315 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46112829 |
aagaccttaaaatttttgacaacattgaccaagagatatacatttatcttaatacaaaaacattagcaagaccacaatatatgatccaatgcctctttct |
46112928 |
T |
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| Q |
316 |
tttatcactataccaaaacatttgagttcat |
346 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
46112929 |
tttatcactataccaaaacatttgagttcat |
46112959 |
T |
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