View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10717_low_3 (Length: 311)
Name: NF10717_low_3
Description: NF10717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10717_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 25116541 - 25116852
Alignment:
| Q |
1 |
taggaatactcgaggattaccaaaaatttgagaagtccctacatagctacagaatgggaacaattacaagagcagaactacaaacaatggtaatgttgtt |
100 |
Q |
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| T |
25116541 |
taggaatactcgaggattaccaaaaatttgagaagtccctacatagctacagaatgggaacaattacaagagaagaactacaaaaaatggtaatattgtt |
25116640 |
T |
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| Q |
101 |
tatacatccaaattttcagaagttacatttttggattttctgtcacatcctataactcttgaattgaatatggcttgcattgaacattaaactttaatac |
200 |
Q |
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| T |
25116641 |
tatacatccaaattttcagaagttacattttttgattttctgtcacatcctataactcttgaattgaatatggcttgcattgaacattaaactttaatac |
25116740 |
T |
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| Q |
201 |
aaaaattatgtt-aaaatactgaaacggagaagaattcatgttgcattcaggtaggcgatttgttgggaaaacactccgatcttgtggagggatttaacg |
299 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25116741 |
aaaaattatgttaaaaatactgtaacggagaagaattcatgttgcattcaggtaggcgatttgttgggaaaacactccgatcttgtggagggatttaacg |
25116840 |
T |
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| Q |
300 |
agtttttgacac |
311 |
Q |
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| T |
25116841 |
agtttttgacac |
25116852 |
T |
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