View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10717_low_7 (Length: 242)
Name: NF10717_low_7
Description: NF10717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10717_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 233
Target Start/End: Original strand, 2358054 - 2358280
Alignment:
| Q |
7 |
gaggatgcaaaataaaattgcggggacaaaattaattaagtgtggtaaagtagatagatttatctcgtggaggggtaatactnnnnnnnnncaatgtgta |
106 |
Q |
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| T |
2358054 |
gaggatgcaaaataaaattacggggacaaaattaattaagtgtggtaaagtagatagatttatctcgtggaggggtaatactaaaaaaaaacaatgtgta |
2358153 |
T |
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| Q |
107 |
ggtaaatacataattgaaatgtcctcgactactttgttcttttgatacttgtgtacgtacttgcaaaacgaattaatgctactctgtatatatctcatca |
206 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2358154 |
ggtaaatacataattgaaatgtcctcgactacttggttcttttgatacttgtgtacgtacttgcaaaacgaattaatgctactctgtatatatctcatca |
2358253 |
T |
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| Q |
207 |
cgtacactctcaaccatatttatttct |
233 |
Q |
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||||||||||||||||||||||||||| |
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| T |
2358254 |
cgtacactctcaaccatatttatttct |
2358280 |
T |
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