View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10717_low_9 (Length: 226)
Name: NF10717_low_9
Description: NF10717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10717_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 48369384 - 48369606
Alignment:
| Q |
1 |
agaaaaccattattttatttcaaatttttcccttgtactaattagttttatatagaccaaacccatttaaacaataggaccttttttcttaata---ata |
97 |
Q |
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| T |
48369384 |
agaaaaacattattttatttcaaatttttcccttgtactaattagttttatatagaccaaacccatttaaacaataggaacttttttcttaatagtaata |
48369483 |
T |
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| Q |
98 |
aataattttaacaagtgctcattctgaccgaattcaattaacttgtggatatggtttaccaaaatgcttgtctagtaagattaccatatttccccgcaaa |
197 |
Q |
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| T |
48369484 |
aataattttaacaagtgctcattctgaccgaattcaattaacttgtggatatggtttaccaaaatgcctgtctagtaagattaccatatttcctcgcaaa |
48369583 |
T |
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| Q |
198 |
ttacaatggcacatgattaatct |
220 |
Q |
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| T |
48369584 |
ttacaatggcacatgattaatct |
48369606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 53436474 - 53436314
Alignment:
| Q |
28 |
ttcccttgtactaattagttttatatagaccaaacccatttaaacaataggaccttttttcttaataataaata--attttaacaa-gtgctcattctga |
124 |
Q |
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|||||| ||| ||||||| || ||||||||||||||||||||| |||| | | |||| ||||||| ||| ||||||| || ||| |||||| | |
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| T |
53436474 |
ttccctagtattaattagcttaatatagaccaaacccatttaatcaatggaaactttgcctttaataaataattttattttaagaaagtggtcattcagg |
53436375 |
T |
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| Q |
125 |
ccgaattcaattaacttgtggatatggtttaccaaaatgcttgtctagtaagattaccata |
185 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||| |||||| |||||||| |
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| T |
53436374 |
ccgaattcaattaacttgtggatatgatttaccaatttgcttgtcaagtaaggttaccata |
53436314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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