View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10718_low_1 (Length: 479)
Name: NF10718_low_1
Description: NF10718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10718_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 3261270 - 3260932
Alignment:
| Q |
1 |
atgtggttttttacaataattaaattatgtgtaattttaggcgtgttcaannnnnnnnatagaaaatttagagttgtaaacaaccagtatttctctacta |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3261270 |
atgtagttttttacaataattaaattatgtataattttaggcgtgttcaattttttttatagaaaatttagagttgtaaacaaccagtatttctctacta |
3261171 |
T |
|
| Q |
101 |
cacgtacccggattggacacgaaatgaaaacgaaatccagacatacactatgacgacaaaaccatagtggttgactaatattggagctatgtgcaactta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3261170 |
cacgtacccggattggacacgaaatgaaaacgaaatccagaca----------cgacaaaaccatagtggttgactaatattggagctatctgcaactta |
3261081 |
T |
|
| Q |
201 |
aatagtaaacgtgacttgatggtcgttgaaattatattatataattttattttattttggac------------tatcatcacgacatgtttaagagac- |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
3261080 |
aatagtaaacgtgacttgatggtcgttgaaattatattatataattttattttattttgaactaaatatgcaagtatcatcacgacatgtttaagagact |
3260981 |
T |
|
| Q |
288 |
--actatcatctgtgctactaaattggtaataatatatatgagaaatgat |
335 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
3260980 |
atactatcatctgtgctactaaattggtaacaata-atatgagaaatgat |
3260932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 7443634 - 7443602
Alignment:
| Q |
7 |
ttttttacaataattaaattatgtgtaatttta |
39 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
7443634 |
ttttttacaataatcaaattatgtgtaatttta |
7443602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 362 - 446
Target Start/End: Original strand, 32452276 - 32452360
Alignment:
| Q |
362 |
attaaatttcatgataataatctgctaaagaaggaaattgggacaaaaaccatggtgataattatattgcattgacgttgaccaa |
446 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32452276 |
attaaatgtcatgataataatctgctaaagaaggaaattgggacaaaaaacatggtgataattatattgcattgacgttgaccaa |
32452360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University