View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10718_low_12 (Length: 266)
Name: NF10718_low_12
Description: NF10718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10718_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 5960403 - 5960173
Alignment:
| Q |
16 |
ggcaaaacaagtatatctttgaaaagggatttaaacgccctaacaatccgattcatgtgattttcaatatcgctaaggacatggattgttgtggtaacaa |
115 |
Q |
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| T |
5960403 |
ggcaaaacaagtatatctttgaaaagggatttaaacgccctaacaatccgattcatgtgattttcaatatggctaaggaaatggattgttctggtaacaa |
5960304 |
T |
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| Q |
116 |
tcttttgtcgggatgacatgggaaacaagataccatttaaatcggcttgaagcctcgtcaagagagttggatttaccttaattgctatgaatcttacaag |
215 |
Q |
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| T |
5960303 |
tcttttgtcgggatgaca---------agagaccatttaaatcggcttgaagcctcgtcaagagagttggatttaccttaattgctatgaatcttacaag |
5960213 |
T |
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| Q |
216 |
aaaatcaatatatattttaagttatggtgatctatttcat |
255 |
Q |
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| T |
5960212 |
aaaatcaatatatattttaagttatggtgatctatttcat |
5960173 |
T |
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