View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10718_low_14 (Length: 250)
Name: NF10718_low_14
Description: NF10718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10718_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 13634770 - 13634543
Alignment:
| Q |
1 |
tgatattgtgaagaatcacagtcaaatgtgacatcaatcgaagattcttagtggtttcgataacataaaaaactgttgtgttgtggtctagatcgcactc |
100 |
Q |
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| T |
13634770 |
tgatattgtgaagaatcacagtcaaatgcgacatcaatcgaagattcttagtggtttcgataacataaaaaactgttgtgttgtggtctagatcgcactc |
13634671 |
T |
|
| Q |
101 |
acaaaactctatttaaaatcctaattataatcagggttttatctctaacaattgccatcacaattctttatattgttgagaatcaatgtcaaacgtagat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
13634670 |
acaaaactctatttaaaatcctaattataatcagggttttatcactaacaattgccatcacaattctttatattgttgagaatcaaagtcgaacgtagat |
13634571 |
T |
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| Q |
201 |
tcaatcaatatcatgttgtgcaaaaacc |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
13634570 |
tcaatcaatatcatgttgtgcaaaaacc |
13634543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 27532349 - 27532565
Alignment:
| Q |
1 |
tgatattgtgaagaatcacagtcaaatgtgacatcaatcgaagattcttagtggtttcgataacataaaaaactgttgtgttgtggtctagatcgcactc |
100 |
Q |
| |
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|||||||||||||||||||| ||||||| ||| |||||||||||||| |||||||||||| ||||||||||| |||||||| ||||| | |||| ||||| |
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| T |
27532349 |
tgatattgtgaagaatcacaatcaaatgcgacctcaatcgaagattcatagtggtttcgacaacataaaaaattgttgtgtcgtggttttgatcacactc |
27532448 |
T |
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| Q |
101 |
acaaaactctatttaaaatcctaattataatcagggttttatctctaacaattgccatcacaattctttatattgttgagaatcaatgtcaaacgtagat |
200 |
Q |
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|||||||||||||||||||||| ||||||||| | |||||||| ||||| |||||||||||||||||| |||||||| ||||| ||||| |||||| |
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| T |
27532449 |
acaaaactctatttaaaatcct-attataatcggagttttatcactaacgattgccatcacaattcttgatattgttaggaatcgtaatcaaatgtagat |
27532547 |
T |
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| Q |
201 |
tcaatcaatatcatgttg |
218 |
Q |
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||||||||| |||||||| |
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| T |
27532548 |
tcaatcaatgtcatgttg |
27532565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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