View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10718_low_15 (Length: 250)
Name: NF10718_low_15
Description: NF10718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10718_low_15 |
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| [»] scaffold0665 (1 HSPs) |
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| [»] scaffold0356 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 3 - 235
Target Start/End: Original strand, 15164751 - 15164983
Alignment:
| Q |
3 |
gttttgggtgcacatgagaagcgtggtcgtaggccccttcctcctctgtcgtgtttggattttttgcagtggtctaatgctaatttattaactcatcttc |
102 |
Q |
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| T |
15164751 |
gttttgggtgcgcatgagaagcgcggtcgtaggcctccgcctcctctgtcgtgttcggattttttgcagtggtctaacgctaatttattaattcatcttc |
15164850 |
T |
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| Q |
103 |
ctactatggggccttttctcacttggtcgaatggcagacttagggcggactctgttgctctcagattggacagagcaatctgtaatgatatttggttgaa |
202 |
Q |
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||||||||||||||||||| ||||||| |||||| |||||| | ||||||||| |||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
15164851 |
ctactatggggccttttcttacttggttgaatggtagacttggtgcggactctattgctctcagattggacagagcaatctgcaacgatatttggttgaa |
15164950 |
T |
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| Q |
203 |
tttttggaggcgcactaattgtaattctcttat |
235 |
Q |
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| T |
15164951 |
tttttggaggcgcgctaattgtaattctcttat |
15164983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0665 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0665
Description:
Target: scaffold0665; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 7231 - 7336
Alignment:
| Q |
7 |
tgggtgcacatgagaagcgtggtcgtaggccccttcctcctctgtcgtgtttggattttttgcagtggtctaatgctaatttattaactcatcttcctac |
106 |
Q |
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||||||| |||||||||||| | ||| |||||| ||||||||| |||||| | |||||| || | ||||| ||||||||| | ||| ||| |||||||| |
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| T |
7231 |
tgggtgctcatgagaagcgtagacgtcggccccctcctcctctatcgtgtattgattttatgaattggtcgaatgctaatcttttacatcaccttcctac |
7330 |
T |
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| Q |
107 |
tatggg |
112 |
Q |
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| T |
7331 |
tttggg |
7336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0356 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0356
Description:
Target: scaffold0356; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 9851 - 9956
Alignment:
| Q |
7 |
tgggtgcacatgagaagcgtggtcgtaggccccttcctcctctgtcgtgtttggattttttgcagtggtctaatgctaatttattaactcatcttcctac |
106 |
Q |
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||||||| |||||||||||| | ||| |||||| ||||||||| |||||| | |||||| || | ||||| ||||||||| | ||| ||| |||||||| |
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| T |
9851 |
tgggtgctcatgagaagcgtagacgtcggccccctcctcctctatcgtgtattgattttatgaattggtcgaatgctaatcttttacatcaccttcctac |
9950 |
T |
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| Q |
107 |
tatggg |
112 |
Q |
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| T |
9951 |
tttggg |
9956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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