View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10718_low_16 (Length: 249)

Name: NF10718_low_16
Description: NF10718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10718_low_16
NF10718_low_16
[»] chr4 (10 HSPs)
chr4 (15-233)||(5467094-5467309)
chr4 (16-95)||(5355376-5355455)
chr4 (16-89)||(5345615-5345688)
chr4 (16-89)||(5422932-5423005)
chr4 (20-84)||(5363854-5363918)
chr4 (16-89)||(5379712-5379785)
chr4 (29-94)||(5357503-5357568)
chr4 (18-95)||(5503244-5503321)
chr4 (16-63)||(5394009-5394056)
chr4 (16-63)||(5413458-5413505)
[»] chr5 (1 HSPs)
chr5 (16-89)||(20329897-20329970)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 5467309 - 5467094
Alignment:
Q  15 agttcatcccccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtactgattgtatccattgatcaaattatg 114  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5467309 agttcatcccccagcttgattttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtactgattgtatccattgatcagattatg 5467210  T
Q  115 nnnnnnntaataatggttttgagttgtactacatgtttgtgtgtatttatttattttttgaataacatgattgtgtgtatttagtattattaatcggtgt 214  Q
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||   ||||    
T  5467209 aaaaaaataataatggttttcagttgtactacatgtttgtgtgtatttatttattttttgaataacatgtttgtgtgtatttagtattattaa---gtgt 5467113  T
Q  215 ttatgatgcgcaatgatgt 233  Q
    ||||||||  |||||||||    
T  5467112 ttatgatgtacaatgatgt 5467094  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 5355376 - 5355455
Alignment:
Q  16 gttcatcccccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtactgattgt 95  Q
    ||||||||||||||| || |||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||    
T  5355376 gttcatcccccagctagattttgtgtatgaacagcatgaagggaagaggtatagaactctgaggtggaggtactgattgt 5355455  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 5345688 - 5345615
Alignment:
Q  16 gttcatcccccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtact 89  Q
    ||||||||||||||| || |||||||||||||||||| |||||| |||||||||| |||| ||| |||| ||||    
T  5345688 gttcatcccccagctagattttgtgtatgaacaacatcaagggatgaggtatagatctctaaggtggagatact 5345615  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 5423005 - 5422932
Alignment:
Q  16 gttcatcccccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtact 89  Q
    ||||||||||||||| || |||||||||||||| ||| |||||||||||| |||| |||| ||| |||||||||    
T  5423005 gttcatcccccagctagattttgtgtatgaacagcatgaagggaagaggtgtagatctctaaggtggaggtact 5422932  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 5363854 - 5363918
Alignment:
Q  20 atcccccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggag 84  Q
    ||||||||||| || |||||||||||||| ||| |||||||||||||||||||||| ||| ||||    
T  5363854 atcccccagctagattttgtgtatgaacagcatgaagggaagaggtatagaactctaaggtggag 5363918  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 5379712 - 5379785
Alignment:
Q  16 gttcatcccccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtact 89  Q
    |||| |||||||||| || |||||||||||||| ||  ||||||||||||||||| |||| ||| |||||||||    
T  5379712 gttcctcccccagctagattttgtgtatgaacagcaggaagggaagaggtatagatctctaaggtggaggtact 5379785  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 5357503 - 5357568
Alignment:
Q  29 cttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtactgattg 94  Q
    ||||| |||||||||||||| ||| ||||||||||||| |||||| | ||| |||| |||||||||    
T  5357503 cttgattttgtgtatgaacagcatgaagggaagaggtacagaactttaaggtggagatactgattg 5357568  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 5503244 - 5503321
Alignment:
Q  18 tcatcccccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtactgattgt 95  Q
    ||||||| || ||||| ||||||| |||||||||| ||||||||||||| | || | ||||| |||| ||||||||||    
T  5503244 tcatccctcaacttgattttgtgtttgaacaacatgaagggaagaggtacaaaattttgaggtggagttactgattgt 5503321  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 5394009 - 5394056
Alignment:
Q  16 gttcatcccccagcttgactttgtgtatgaacaacataaagggaagag 63  Q
    ||||||||||| ||| || |||||||||||||||||| ||||||||||    
T  5394009 gttcatcccccggctagattttgtgtatgaacaacatgaagggaagag 5394056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 5413458 - 5413505
Alignment:
Q  16 gttcatcccccagcttgactttgtgtatgaacaacataaagggaagag 63  Q
    ||||||||||| ||| || |||||||||||||||||| ||||||||||    
T  5413458 gttcatcccccggctagattttgtgtatgaacaacatgaagggaagag 5413505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 20329897 - 20329970
Alignment:
Q  16 gttcatcccccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtact 89  Q
    ||||||||||||||| || |||||||||||||| ||| |||||||||||| |||| |||| ||| |||||||||    
T  20329897 gttcatcccccagctagattttgtgtatgaacagcatgaagggaagaggtgtagatctctaaggtggaggtact 20329970  T

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