View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10718_low_18 (Length: 241)
Name: NF10718_low_18
Description: NF10718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10718_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 15164767 - 15164544
Alignment:
| Q |
1 |
tcatgtgcacccaaaactgcgttaaagtctccaataaataaccaaggcccctggaatctaccttgaatgtatgtaaggtctgcccaaagatcccgacggg |
100 |
Q |
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| T |
15164767 |
tcatgcgcacccaaaacggcgttaaagtctccaataaataaccaaggcccctggtatctaccttgaatgtaagtaaggtctgcccaaagatcccgacggg |
15164668 |
T |
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| Q |
101 |
acaaatacgacctactggcatatatagccgcaatataaaaagaggactgcagataaaacacctccagagcaatacactgagaagacataaatataatagt |
200 |
Q |
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| T |
15164667 |
acaaatacaacgtactggcatatatagccgcaatataaaaagaggactgcagataaaacacctccatagcaatacactgagaagacataaatataatagt |
15164568 |
T |
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| Q |
201 |
aggatttacttcattaccccaaag |
224 |
Q |
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| T |
15164567 |
atggtttacttcagtaccccaaag |
15164544 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 14048250 - 14048201
Alignment:
| Q |
1 |
tcatgtgcacccaaaactgcgttaaagtctccaataaataaccaaggccc |
50 |
Q |
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||||| |||||||||| | |||||||||||||||||| ||||||||||| |
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| T |
14048250 |
tcatgagcacccaaaatggagttaaagtctccaataaacaaccaaggccc |
14048201 |
T |
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