View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10718_low_19 (Length: 240)
Name: NF10718_low_19
Description: NF10718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10718_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 10426336 - 10426239
Alignment:
| Q |
127 |
ttaattcaacgcttcatcgtagtatctcggttctccacattattctctccttttcttctcacctatcccattttcccttatccttccaccctgttttt |
224 |
Q |
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| T |
10426336 |
ttaattcaacgcttcatcgtaatatctccgttctccacattattctctccttttcttctcacctatcccattttcccttatccttccaccctattttt |
10426239 |
T |
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Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 10426771 - 10426677
Alignment:
| Q |
1 |
caccattgtatatttattaattcagcacattggaattgatcaatttgaatgatacacatgcctccaaggtcttatctagaatttacagggcttgct |
96 |
Q |
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| T |
10426771 |
caccattgtatatttattatttcagcacattggaattgatcaatttgaatgatacacatgcct-caaggtcttatctagaatttacagagcttgct |
10426677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4410864 - 4410938
Alignment:
| Q |
1 |
caccattgtatatttattaattcagcacattggaattgatcaatttgaatgatacacatgcctccaaggtcttat |
75 |
Q |
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| T |
4410864 |
caccattgtatattaattaattcagcacattggaattgatcaatgtgaatggtacacatgcctccaaggtcttat |
4410938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 224
Target Start/End: Original strand, 24819406 - 24819530
Alignment:
| Q |
101 |
gctattcttttcgtctttgttcctttttaattcaacgcttcatcgtagtatctcggttctccacattattctctccttttcttctcac-ctatcccattt |
199 |
Q |
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| T |
24819406 |
gctattcttttcctctctattcaattttaattcaacgctccatcgtaatatgttcagtctccacattattttctctttttcctctcactctatcgcatct |
24819505 |
T |
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| Q |
200 |
tcccttatccttccaccctgttttt |
224 |
Q |
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| T |
24819506 |
tccctcatccttccaccctattttt |
24819530 |
T |
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