View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10718_low_2 (Length: 435)
Name: NF10718_low_2
Description: NF10718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10718_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 79 - 419
Target Start/End: Complemental strand, 11656125 - 11655785
Alignment:
| Q |
79 |
atgcgtgataaacttgagacctctgatagagaacaaaattatctcctgcatacaactccttgcccatcaattccacctgtgcaactcatgctagggagac |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
11656125 |
atgcgtgataaacttgagacctctgatagagaacaaaattatctcctgcatacaactccttgcccatcaattccacttgtacaactcatgctagggagac |
11656026 |
T |
|
| Q |
179 |
tcaaattctccaccatcgcaatatcgttgttgaatccgttattaccaacaaaacgagctacggaacaatctggggagaacaagcttgaggtttcatactc |
278 |
Q |
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| T |
11656025 |
tcaaattctccaccatcgcaatatcattgttgaatccgtcattaccaacaaaacgagctaccgaacaatctggggagaacaagcttgttgtttcatactc |
11655926 |
T |
|
| Q |
279 |
ttttccacctcccatcattggcatttttgcaccaatgttgacacgactcacatagttaggtttatatgtttggcccaacacaccactcacttcattgctc |
378 |
Q |
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||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11655925 |
ttttccacctcccattattggcatttttgctccaatgttcacacgactcacatagttaggtttatatgtttggcccaacacaccacttacttcattgctc |
11655826 |
T |
|
| Q |
379 |
aaagacaagaatttgaagcctaaatcaagatgagcaaaaca |
419 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11655825 |
aaagacaagaatttgaaccctaaatcaagatgagcaaaaca |
11655785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 114 - 419
Target Start/End: Complemental strand, 11669858 - 11669553
Alignment:
| Q |
114 |
aaattatctcctgcatacaactccttgcccatcaattccacctgtgcaactcatgctagggagactcaaattctccaccatcgcaatatcgttgttgaat |
213 |
Q |
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||||||||||||||| |||||||||| ||||||| |||| ||||||||||||||||||||| | | || ||||||||||||||||| ||||||||| |
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| T |
11669858 |
aaattatctcctgcaaacaactccttctccatcaacaccacttgtgcaactcatgctagggagcataagatcttccaccatcgcaatatcattgttgaat |
11669759 |
T |
|
| Q |
214 |
ccgttattaccaacaaaacgagctacggaacaatctggggagaacaagcttgaggtttcatactcttttccacctcccatcattggcatttttgcaccaa |
313 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |||| |
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| T |
11669758 |
ccgtcattaccaacaaaacgagctacggaacaatctggggagaacaagcttgttgtttcatactcttttccacctcccattattggcattttcgctccaa |
11669659 |
T |
|
| Q |
314 |
tgttgacacgactcacatagttaggtttatatgtttggcccaacacaccactcacttcattgctcaaagacaagaatttgaagcctaaatcaagatgagc |
413 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11669658 |
tgttcacacgactcacatagttagatttatatgtttggcccaacacaccacttacttcattgctcaaagacaagaatttgaaccctaaatcaagatgagc |
11669559 |
T |
|
| Q |
414 |
aaaaca |
419 |
Q |
| |
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|||||| |
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|
| T |
11669558 |
aaaaca |
11669553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 113 - 419
Target Start/End: Complemental strand, 11664548 - 11664242
Alignment:
| Q |
113 |
aaaattatctcctgcatacaactccttgcccatcaattccacctgtgcaactcatgctagggagactcaaattctccaccatcgcaatatcgttgttgaa |
212 |
Q |
| |
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|||||||||| |||| |||||||||| ||||||||||||| |||||| |||| ||||||||| |||||||||||| || |||||| ||||| || |
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| T |
11664548 |
aaaattatcttttgcagacaactccttctccatcaattccacttgtgcagctcaagctagggagggccaaattctccacaattccaatatttttgtttaa |
11664449 |
T |
|
| Q |
213 |
tccgttattaccaacaaaacgagctacggaacaatctggggagaacaagcttgaggtttcatactcttttccacctcccatcattggcatttttgcacca |
312 |
Q |
| |
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||| || || |||| ||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11664448 |
tccattgttcccaatgaaacgtgccacagaacaatctggagagaacaagcttgaggtttcatactcttttccacctcccattattggcatttttgcacca |
11664349 |
T |
|
| Q |
313 |
atgttgacacgactcacatagttaggtttatatgtttggcccaacacaccactcacttcattgctcaaagacaagaatttgaagcctaaatcaagatgag |
412 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11664348 |
atgttcacacgactcacatagttaggtttatatgtttggcccaacacaccatttacttcattgctcaaagacaagaatttgaaccctaaatcaagatgag |
11664249 |
T |
|
| Q |
413 |
caaaaca |
419 |
Q |
| |
|
||||||| |
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|
| T |
11664248 |
caaaaca |
11664242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 114 - 419
Target Start/End: Original strand, 7343949 - 7344254
Alignment:
| Q |
114 |
aaattatctcctgcatacaactccttgcccatcaattccacctgtgcaactcatgctagggagactcaaattctccaccatcgcaatatcgttgttgaat |
213 |
Q |
| |
|
||||||||| |||| |||||||||| ||||||||||||| |||||| ||| ||||||||| ||||||||||| | ||||||| ||||| ||| |
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| T |
7343949 |
aaattatcttttgcagacaactccttctccatcaattccacttgtgcatttcaagctagggagggccaaattctccatagttccaatatctttgtttaat |
7344048 |
T |
|
| Q |
214 |
ccgttattaccaacaaaacgagctacggaacaatctggggagaacaagcttgaggtttcatactcttttccacctcccatcattggcatttttgcaccaa |
313 |
Q |
| |
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|| | || |||| ||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||| |||| ||||| ||||||||| |||| |||| |
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| T |
7344049 |
ccagtgtttccaatgaaacgtgctacagaacaatctggagagaacaagcttgacgtttcatactcttttgcaccgcccattattggcattcttgctccaa |
7344148 |
T |
|
| Q |
314 |
tgttgacacgactcacatagttaggtttatatgtttggcccaacacaccactcacttcattgctcaaagacaagaatttgaagcctaaatcaagatgagc |
413 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7344149 |
tgttcacacgactcacatagttaggtttatatgtttggcccaacacgccactcacttcattgctcaaagacaagaatttgaagcctaaatcaaggtgagc |
7344248 |
T |
|
| Q |
414 |
aaaaca |
419 |
Q |
| |
|
|||||| |
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|
| T |
7344249 |
aaaaca |
7344254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 11656226 - 11656169
Alignment:
| Q |
8 |
aagcagagaatcatccaagttatttgatgatttgatacattattgtatttaaacaaat |
65 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11656226 |
aagcacagaatcatccaagttatttgatgatttgatacattattgtatttaaacaaat |
11656169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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