View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10718_low_20 (Length: 239)
Name: NF10718_low_20
Description: NF10718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10718_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 13634783 - 13634992
Alignment:
| Q |
15 |
accttttaaaaccctaatgataatgatgccatgataaagataaagataaaaataaggagcactacctgtccaaggcttcaagatacttttgcttcctaat |
114 |
Q |
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| T |
13634783 |
accttttaaaaccctaatgataatgatgccatgataaagataaagataaaaataaggagcactacctgtccaaggcttcaagatacttttgcttcctaat |
13634882 |
T |
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| Q |
115 |
ctcaaagaacattttcatggagcttggactgtcagtgatattgataaaggcactgaggtacttctcactttcatcaaattcaccagcaagaattttctct |
214 |
Q |
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| T |
13634883 |
ctcaaagaacattttcatggagcttggactgtcagtgatattgataaaggcactgaggtacttctcactttcatcaaattcaccagcaagaattttctct |
13634982 |
T |
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| Q |
215 |
tcaaagtact |
224 |
Q |
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| T |
13634983 |
tcaaagtact |
13634992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 31 - 224
Target Start/End: Complemental strand, 27532279 - 27532087
Alignment:
| Q |
31 |
atgataatgatgccatgataaagataaagataaaaataaggagcactacctgtccaaggcttcaagatacttttgcttcctaatctcaaagaacattttc |
130 |
Q |
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| T |
27532279 |
atgataatgatgtcatgataaagataaagataaaaa-aaggagcactacctgtccaaggcttccaaatacttctgcttcctaatctgaaaaaacattttc |
27532181 |
T |
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| Q |
131 |
atggagcttggactgtcagtgatattgataaaggcactgaggtacttctcactttcatcaaattcaccagcaagaattttctcttcaaagtact |
224 |
Q |
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| T |
27532180 |
atggagctttgactgtcagtgatattggtaaaggcactgaggtacttctcactttcatcaaattctccatcaaggattttctcttgaaagtact |
27532087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 13644290 - 13644341
Alignment:
| Q |
75 |
actacctgtccaaggcttcaagatacttttgcttcctaatctcaaagaacat |
126 |
Q |
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| T |
13644290 |
actacctgtccaaggcttcaaaatacttctgcttcctaatctcaaagaacat |
13644341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 224
Target Start/End: Original strand, 13689792 - 13689940
Alignment:
| Q |
76 |
ctacctgtccaaggcttcaagatacttttgcttcctaatctcaaagaacattttcatggagcttggactgtcagtgatattgataaaggcactgaggtac |
175 |
Q |
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| T |
13689792 |
ctacctctccaagacttcataatatttttgcttcctaatctcaaagagcattttcatggagccttcattttcattagtatttgtaaaaccattgaggtac |
13689891 |
T |
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| Q |
176 |
ttctcactttcatcaaattcaccagcaagaattttctcttcaaagtact |
224 |
Q |
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| T |
13689892 |
ttctcacactcatcccaatctccagcaaggattttctcttcaaaatact |
13689940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27532329 - 27532283
Alignment:
| Q |
1 |
tcttaaccacgtctaccttttaaaaccctaatgataatgatgccatg |
47 |
Q |
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| T |
27532329 |
tcttaacgaagtctactttttaaaaccctaatgataatgatgccatg |
27532283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 47414833 - 47414882
Alignment:
| Q |
83 |
tccaaggcttcaagatacttttgcttcctaatctcaaagaacattttcat |
132 |
Q |
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| T |
47414833 |
tccaacgcttcaagatacttctgcttcctaatctcgaagaaaatcttcat |
47414882 |
T |
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