View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10718_low_21 (Length: 223)

Name: NF10718_low_21
Description: NF10718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10718_low_21
NF10718_low_21
[»] chr6 (2 HSPs)
chr6 (12-179)||(32342975-32343141)
chr6 (129-179)||(26219867-26219917)
[»] chr3 (4 HSPs)
chr3 (110-180)||(20844737-20844807)
chr3 (113-180)||(39400132-39400199)
chr3 (114-178)||(18360068-18360131)
chr3 (120-164)||(42980897-42980941)
[»] chr7 (7 HSPs)
chr7 (114-183)||(30279169-30279238)
chr7 (111-179)||(48693143-48693211)
chr7 (114-181)||(5758781-5758847)
chr7 (109-179)||(47086854-47086924)
chr7 (109-181)||(3557099-3557170)
chr7 (112-181)||(3361166-3361235)
chr7 (108-145)||(31726771-31726808)
[»] chr8 (4 HSPs)
chr8 (111-183)||(32049048-32049120)
chr8 (130-205)||(38276396-38276475)
chr8 (108-146)||(34273258-34273296)
chr8 (113-181)||(10177134-10177200)
[»] chr5 (3 HSPs)
chr5 (114-182)||(35446954-35447021)
chr5 (110-148)||(8462942-8462980)
chr5 (113-146)||(23311681-23311714)
[»] chr2 (2 HSPs)
chr2 (111-181)||(44723708-44723779)
chr2 (110-146)||(30481605-30481641)
[»] scaffold0219 (1 HSPs)
scaffold0219 (109-182)||(13404-13476)
[»] chr1 (6 HSPs)
chr1 (114-179)||(44061376-44061440)
chr1 (111-183)||(5953373-5953445)
chr1 (111-166)||(21281234-21281289)
chr1 (130-181)||(27663935-27663985)
chr1 (114-183)||(35938326-35938394)
chr1 (120-180)||(622845-622904)
[»] scaffold0110 (1 HSPs)
scaffold0110 (109-146)||(31520-31557)


Alignment Details
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 32342975 - 32343141
Alignment:
Q  12 ttatttgtacggatacaaacgttattagatgaaaaaccaaatcaacaaaagtaccattaataatgcaaaacaatattgaaattatcacacaactacaaag 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||     
T  32342975 ttatttgtacggatacaaacgttattagatgaaaaaccaaatcaacaagagtaccattaataatgcaaaacaatattgaaattatcacacgaccacaaat 32343074  T
Q  112 aaaattgttcttctctcttttgtttttgctcattcacgtgtctacgtgagttaacacacgctgaaaaa 179  Q
    ||||||||||||||| ||||||||||| |||||||||| || ||||| ||||||  |||| |||||||    
T  32343075 aaaattgttcttctcccttttgttttt-ctcattcacgagtttacgtaagttaattcacgttgaaaaa 32343141  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 26219917 - 26219867
Alignment:
Q  129 ttttgtttttgctcattcacgtgtctacgtgagttaacacacgctgaaaaa 179  Q
    ||||||||||||||||||| ||| |||| ||||||||| || |||||||||    
T  26219917 ttttgtttttgctcattcatgtgcctacttgagttaactcatgctgaaaaa 26219867  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 20844737 - 20844807
Alignment:
Q  110 agaaaattgttcttctctcttttgtttttgctcattcacgtgtctacgtgagttaacacacgctgaaaaat 180  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20844737 agaaaattgctcttctcccttttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaat 20844807  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 39400199 - 39400132
Alignment:
Q  113 aaattgttcttctctcttttgtttttgctcattcacgtgtctacgtgagttaacacacgctgaaaaat 180  Q
    |||||| |||| || ||| | ||||| |||||||||||| |||||||||||||| |||||| ||||||    
T  39400199 aaattgctcttttcccttctcttttttctcattcacgtgcctacgtgagttaactcacgctaaaaaat 39400132  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 18360068 - 18360131
Alignment:
Q  114 aattgttcttctctcttttgtttttgctcattcacgtgtctacgtgagttaacacacgctgaaaa 178  Q
    ||||| ||||||||| | ||||||||||||||| ||| | ||||| ||||||| |||||||||||    
T  18360068 aattgctcttctctcatctgtttttgctcattctcgt-tttacgtaagttaactcacgctgaaaa 18360131  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 42980897 - 42980941
Alignment:
Q  120 tcttctctcttttgtttttgctcattcacgtgtctacgtgagtta 164  Q
    ||||||| ||||||||||||||||||| | || ||||||||||||    
T  42980897 tcttctcccttttgtttttgctcattctcatgcctacgtgagtta 42980941  T

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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 30279238 - 30279169
Alignment:
Q  114 aattgttcttctctcttttgtttttgctcattcacgtgtctacgtgagttaacacacgctgaaaaatgtc 183  Q
    ||||| ||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30279238 aattgatcttctcccatttgtttttgctcattcacgtgtctacgtgagttaactcacgctgaaaaatgtc 30279169  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 48693143 - 48693211
Alignment:
Q  111 gaaaattgttcttctctcttttgtttttgctcattcacgtgtctacgtgagttaacacacgctgaaaaa 179  Q
    |||||||||||||||| ||||||||||| ||||||||||||| | ||||||||||| |||| |||||||    
T  48693143 gaaaattgttcttctcccttttgtttttactcattcacgtgtatgcgtgagttaactcacgttgaaaaa 48693211  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 5758781 - 5758847
Alignment:
Q  114 aattgttcttctctcttttgtttttgctcattcacgtgtctacgtgagttaacacacgctgaaaaatg 181  Q
    ||||| ||||||| ||||||||||||||||||| |||| |||||| ||||||| ||||||||||||||    
T  5758781 aattgctcttctcccttttgtttttgctcattcccgtg-ctacgttagttaactcacgctgaaaaatg 5758847  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 47086854 - 47086924
Alignment:
Q  109 aagaaaattgttcttctctcttttgtttttgctcattcacgtgtctacgtgagttaacacacgctgaaaaa 179  Q
    |||||||||||||||||| || || ||||||||||||  |||| | |||||||||||| ||||||||||||    
T  47086854 aagaaaattgttcttctccctcttatttttgctcatttccgtgcccacgtgagttaactcacgctgaaaaa 47086924  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 3557099 - 3557170
Alignment:
Q  109 aagaaaattgttcttctctcttttgtttttgctcattcacgtgtctacgtgagttaacacacgctgaaaaatg 181  Q
    |||| ||||||||||||| | ||| |||||||| |||  |||| |||||||||||||| ||||||||||||||    
T  3557099 aagataattgttcttctcccatttatttttgcttattaccgtg-ctacgtgagttaactcacgctgaaaaatg 3557170  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 3361235 - 3361166
Alignment:
Q  112 aaaattgttcttctctcttttgtttttgctcattcacgtgtctacgtgagttaacacacgctgaaaaatg 181  Q
    |||||||| |||||| |||||||||||||||||||| |||  |  |||||||||  ||| ||||||||||    
T  3361235 aaaattgtccttctcccttttgtttttgctcattcaagtgcatgtgtgagttaattcacactgaaaaatg 3361166  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 31726808 - 31726771
Alignment:
Q  108 aaagaaaattgttcttctctcttttgtttttgctcatt 145  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  31726808 aaagaaaattgctcttctcccttttgtttttgctcatt 31726771  T

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Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 32049048 - 32049120
Alignment:
Q  111 gaaaattgttcttctctcttttgtttttgctcattcacgtgtctacgtgagttaacacacgctgaaaaatgtc 183  Q
    |||||||| |||| ||  ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  32049048 gaaaattgctcttttcctttttgtttttgcttattcacgtgtctacgtgagttaactcacgctgaaaaatgtc 32049120  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 38276475 - 38276396
Alignment:
Q  130 tttgtttttgctcattcacgtgtctacgtgagttaacacacgctgaaaaatgt----cgtgaattaactcacattgaaaa 205  Q
    |||||||||||||||||||||| |||| ||||| ||| || ||||||||||||    ||||| ||||||||| |||||||    
T  38276475 tttgtttttgctcattcacgtgcctacttgagtgaactcatgctgaaaaatgttcggcgtgagttaactcacgttgaaaa 38276396  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 34273296 - 34273258
Alignment:
Q  108 aaagaaaattgttcttctctcttttgtttttgctcattc 146  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  34273296 aaagaaaattgctcttctcacttttgtttttgctcattc 34273258  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 10177134 - 10177200
Alignment:
Q  113 aaattgttcttctctcttttgtttttgctcattcacgtgtctacgtgagttaacacacgctgaaaaatg 181  Q
    |||||| ||||||| ||||||||||||||||||||| || ||||| |||||||| | || |||||||||    
T  10177134 aaattgctcttctc-cttttgtttttgctcattcacatgcctacg-gagttaactcgcgttgaaaaatg 10177200  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 35446954 - 35447021
Alignment:
Q  114 aattgttcttctctcttttgtttttgctcattcacgtgtctacgtgagttaacacacgctgaaaaatgt 182  Q
    ||||| ||||||| | |||||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  35446954 aattgctcttctcccatttgtttttgctcattcacgtg-ctacgtgagttaactcacgcttaaaaatgt 35447021  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 8462942 - 8462980
Alignment:
Q  110 agaaaattgttcttctctcttttgtttttgctcattcac 148  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  8462942 agaaaattgctcttctctcttttgtttttgctcattcac 8462980  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 23311681 - 23311714
Alignment:
Q  113 aaattgttcttctctcttttgtttttgctcattc 146  Q
    ||||||||||||||||||| ||||||||||||||    
T  23311681 aaattgttcttctctctttcgtttttgctcattc 23311714  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 44723779 - 44723708
Alignment:
Q  111 gaaaattgttcttctctctttt-gtttttgctcattcacgtgtctacgtgagttaacacacgctgaaaaatg 181  Q
    |||||||| |||||| |||||| ||||||||||| ||||||| ||||||||||||||  |||||| ||||||    
T  44723779 gaaaattgctcttctttctttttgtttttgctcactcacgtgcctacgtgagttaacttacgctgcaaaatg 44723708  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 30481605 - 30481641
Alignment:
Q  110 agaaaattgttcttctctcttttgtttttgctcattc 146  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  30481605 agaaaattgttcttctccctttcgtttttgctcattc 30481641  T

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Target: scaffold0219 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 13476 - 13404
Alignment:
Q  109 aagaaaattgttcttctctcttttgtttttgctcattcacgtgtctacgtgagttaacacacgctgaaaaatgt 182  Q
    |||||||||||||||||  ||||||||||||| |||| |||| ||||  ||||||||| || ||||||||||||    
T  13476 aagaaaattgttcttcta-cttttgtttttgcacatttacgtatctagttgagttaactcatgctgaaaaatgt 13404  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 44061440 - 44061376
Alignment:
Q  114 aattgttcttctctcttttgtttttgctcattcacgtgtctacgtgagttaacacacgctgaaaaa 179  Q
    ||||| ||||||| | ||||||||||||||||| |||| |||| ||||||||| ||||||||||||    
T  44061440 aattgctcttctcccgtttgtttttgctcattcccgtg-ctacatgagttaactcacgctgaaaaa 44061376  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 5953445 - 5953373
Alignment:
Q  111 gaaaattgttcttctctcttttgtttttgctcattcacgtgtctacgtgagttaacacacgctgaaaaatgtc 183  Q
    |||||||||||| ||| |||||||||||  |||||||| || |||||||||||||| ||   |||||||||||    
T  5953445 gaaaattgttctcctcccttttgttttttatcattcacatgcctacgtgagttaactcatattgaaaaatgtc 5953373  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 21281234 - 21281289
Alignment:
Q  111 gaaaattgttcttctctcttttgtttttgctcattcacgtgtctacgtgagttaac 166  Q
    |||||||| ||||||| ||||||||||| ||||||| |||| |||||| |||||||    
T  21281234 gaaaattgctcttctcccttttgtttttactcattcgcgtgcctacgtaagttaac 21281289  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 27663935 - 27663985
Alignment:
Q  130 tttgtttttgctcattcacgtgtctacgtgagttaacacacgctgaaaaatg 181  Q
    ||||||||||||||||| |||| ||||||||| |||| ||||||||||||||    
T  27663935 tttgtttttgctcattcccgtg-ctacgtgagctaactcacgctgaaaaatg 27663985  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 35938326 - 35938394
Alignment:
Q  114 aattgttcttctctcttttgtttttgctcattcacgtgtctacgtgagttaacacacgctgaaaaatgtc 183  Q
    ||||| ||||||| | ||||||||||||||||| |||| |||| | ||||||| ||| ||||||||||||    
T  35938326 aattgctcttctcccatttgtttttgctcattctcgtg-ctacataagttaactcaccctgaaaaatgtc 35938394  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 622845 - 622904
Alignment:
Q  120 tcttctctcttttgtttttgctcattcacgtgtctacgtgagttaacacacgctgaaaaat 180  Q
    ||||||| | ||||||||||||||||| |||  |||||||||||||| |||| ||||||||    
T  622845 tcttctcccatttgtttttgctcattcccgtc-ctacgtgagttaactcacgttgaaaaat 622904  T

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Target: scaffold0110 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 31557 - 31520
Alignment:
Q  109 aagaaaattgttcttctctcttttgtttttgctcattc 146  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  31557 aagaaaattgtttttctcccttttgtttttgctcattc 31520  T

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